View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11970_high_1 (Length: 713)

Name: NF11970_high_1
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11970_high_1
NF11970_high_1
[»] chr8 (1 HSPs)
chr8 (18-700)||(10312437-10313122)


Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Original strand, 10312437 - 10313122
Alignment:
Q  18 aaacatctcttaaggagcagcatcacttcaactgtattcatggctgtgacacaaaaatggacatggaaacaagggttaataaagaaaggttgtggcttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312437 aaacatctcttaaggagcagcatcacttcaactgtattcatggctgtgacacaaaaatggacatggaaacaagggttaataaagaaaggttgtggcttga 10312536  T
Q  118 cgattcgagttatcaacatgcttttgcagaagaaaaacagtttatttctgaaacaattgagtttgaagagaaatggtattcttgtccagaagtgctcaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312537 cgattcgagttatcaacatgcttttgcagaagaaaaacagtttatttctgaaacaattgagtttgaagagaaatggtattcttgtccagaagtgctcaat 10312636  T
Q  218 gaggaagcttgtacattttcatcaaatgtttatagccttggagttcttctttttgaggtcagcaaatttttaacacatttttattactttcataaacctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312637 gaggaagcttgtacattttcatcaaatgtttatagccttggagttcttctttttgaggtcagcaaatttttaacacatttttattactttcataaacctt 10312736  T
Q  318 tatcctgcataatttcctctcgata----gccaaaaatattttgttaagtttcactaattaaaataaccacagggctgttatgcacaatttaatctaacc 413  Q
    |||||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312737 tatcctgcataatttcctctcgatatatagccaaaa-tattttgttaagtttcactaattaaaataaccacagggctgttatgcacaatttaatctaacc 10312835  T
Q  414 ttaggaaatgaaattgatacatatatgttttgacttacaagttttattccaacttcttggattaattatgctatcatttttaactattgagttgcttctc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312836 ttaggaaatgaaattgatacatatatgttttgacttacaagttttattccaacttcttggattaattatgctatcatttttaactattgagttgcttctc 10312935  T
Q  514 agtttttagatcatcaccctataattattcataacctattttgttaacattttagtggatgcttctcacagttgctgtgcaatattgagtcattggaagc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10312936 agtttttagatcatcaccctataattattcataacctattttgttaacattttagtggatgcttctcacagttgctgtgcaatattgagtcattggaagc 10313035  T
Q  614 acattcaactgtgatgtttgatatgcgtcatagaatcttaccgccaaaatttctatcacaaaatgcaaaggacgctggtttttgtct 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10313036 acattcaactgtgatgtttgatatgcgtcatagaatcttaccgccaaaatttctatcacaaaatgcaaaggacgctggtttttgtct 10313122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University