View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_high_3 (Length: 425)
Name: NF11970_high_3
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 7235682 - 7235293
Alignment:
| Q |
17 |
caccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactccacatgggcagaattattcaaaattc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7235682 |
caccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactccacatgcgcagaattattcaaaattc |
7235583 |
T |
|
| Q |
117 |
attgcaccgtctaccaagttattgatcacataatctcaaccacaccagaaatagaatcatcaaaggaaaaagaaaaggcaacagccggtaacaaagaagg |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
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| T |
7235582 |
attgcaccgtctaccaagttattgatcacataatcccaaccacaccagaaatagaatcatcaaagaaaaaagaaaaagcaatagccggtaacaaagaagg |
7235483 |
T |
|
| Q |
217 |
atctgttgtagaaaaggaaaaatctgccgagagtaacaaagaacagtggtcacgcctggatgcaatcgttctccaatggatttacggaacgatctccacc |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7235482 |
atccgttgtagaaaaggaaaaatctgccgagagtaacaaagaacaatggtcacgcctggatgcaatcgttctccaatggatttacggaacgatctccacc |
7235383 |
T |
|
| Q |
317 |
gacctccttcacaccatcatgtcacctggttcaaccgcacgacaaacattggagcgattggaaaacatcttccaggacaacaaagcttct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7235382 |
gacctccttcacaccatcatgtcacctggttcaaccgcacagcaaacatgggagcgattggaaaacatcttccaggacaacaaagcttct |
7235293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 19655022 - 19654633
Alignment:
| Q |
17 |
caccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactccacatgggcagaattattcaaaattc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19655022 |
caccccgcccttgctgtgaacaatatcagaaacttcattcccatcactctagagatggaaaccaaccattactccacatgggcagaattattcaaaattc |
19654923 |
T |
|
| Q |
117 |
attgcaccgtctaccaagttattgatcacataatctcaaccacaccagaaatagaatcatcaaaggaaaaagaaaaggcaacagccggtaacaaagaagg |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
19654922 |
attgcaccgtctaccaagttattgatcacataatcccaaccacaccagaaacagaatcatcaaaggaaaaagaaaaagcaacagccggtaacaaacaagg |
19654823 |
T |
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| Q |
217 |
atctgttgtagaaaaggaaaaatctgccgagagtaacaaagaacagtggtcacgcctggatgcaatcgttctccaatggatttacggaacgatctccacc |
316 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19654822 |
atccgttgtagaaaaggaaaaatttgccgagagtaacaaagaacagtggtcacgcctagatgcaatcgttctccaatggatttacggaacgatctccacc |
19654723 |
T |
|
| Q |
317 |
gacctccttcacaccatcatgtcacctggttcaaccgcacgacaaacattggagcgattggaaaacatcttccaggacaacaaagcttct |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19654722 |
gacctccttcacacaatcatgtcacctggttcaaccgcacaacaaacatgagagcgattggaaaacatcttccaggacaacaaagcttct |
19654633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 17613014 - 17613117
Alignment:
| Q |
252 |
acaaagaacagtggtcacgcctggatgcaatcgttctccaatggatttacggaacgatctccaccgacctccttcacaccatcatgtcacctggttcaac |
351 |
Q |
| |
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|||||||||| | ||||||||| |||| |||| ||| | ||| |||||| |||| |||||||||||||| ||||| || ||| |||||||||||||||| |
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| T |
17613014 |
acaaagaacaatagtcacgcctagatgtaatcattcacaaatttatttacagaacaatctccaccgaccttcttcaaacaatcttgtcacctggttcaac |
17613113 |
T |
|
| Q |
352 |
cgca |
355 |
Q |
| |
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|||| |
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|
| T |
17613114 |
cgca |
17613117 |
T |
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