View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_low_2 (Length: 596)
Name: NF11970_low_2
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Original strand, 35627103 - 35627665
Alignment:
| Q |
15 |
agttattactaaaaatggaaacttttatatctgtgaaaagagtatgtataccaaccagaaacgatcatttccttgaggccatatgatttgggtgaatatt |
114 |
Q |
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| T |
35627103 |
agttattattaaaaatggaaacttttatatctgtgaaaagagtat----accaaccagaaacgattatttccttgtggccatatgatttgggtgaatatt |
35627198 |
T |
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| Q |
115 |
tgacatccaagcatagttaatggatcttggatatccaaagattcatataagggaagtgttaagagttgtcctgagtagccatggaaaggtctatcactta |
214 |
Q |
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| T |
35627199 |
tgacatccaagcatagttaatggatcttggatatccaaagattcatataagggaagtgttaagagttgtcctgagtagccatggaaaggtctatcactta |
35627298 |
T |
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| Q |
215 |
tcttttgcgcttttgtttccaaagggagcttgaagaattcttcaattccaaagataacattgtcacaaagttctttgccaattttatcatagtgtgccac |
314 |
Q |
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| T |
35627299 |
tcttttgcgcttttgtttccaaagggagcttgaagaattcttcaattccaaagataacattgtcacaaagttctttgccaattttatcatagtgtgccac |
35627398 |
T |
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| Q |
315 |
gaaacaaccatagtcttctagtgaagttttcacaacattgcaagctgagacccatgtgtcagtaccaggtttcatgttttggtcggacaagtcaacgaca |
414 |
Q |
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| T |
35627399 |
gaaacaaccatagtcttctagtgaagttttcacaacattgcaagctgagacccatgtgtcagtaccaggtttcatgttttggtcggacaagtcaacgaca |
35627498 |
T |
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| Q |
415 |
gggattatctgagagactgtttctgatcccatgatgctctttcactctcaaaataattggtgcatggtaaaggaaactatatctggtgttgatttatagc |
514 |
Q |
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| T |
35627499 |
gggattatctgagagactgtttctgatcccatgatgctctttcactctcaaaataattggtgcatggtaaaggaaactatatctggtgttgatttatagc |
35627598 |
T |
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| Q |
515 |
ctgagaaacctcccttgtatgtttgagattaatatannnnnnnncaggaccactaaataatttcaca |
581 |
Q |
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| T |
35627599 |
ctgagaaacctcccttgtatgtttgagattaatatatttattttcaggaccactaaataatttcaca |
35627665 |
T |
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