View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_low_3 (Length: 481)
Name: NF11970_low_3
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 2487714 - 2488077
Alignment:
| Q |
1 |
ctcaaattcacccgatctcctatgttttttggtcggtttcgattaccgttggactcagttcacccgacagaacccgacagatgacactcattaaaaccaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
2487714 |
ctcaaattcactcgatctcctatgttttttggtcggtttcgattaccgttggactcagttcatccgacagaactcgacagatgacactcattaaaaccaa |
2487813 |
T |
|
| Q |
101 |
aaaagatgcactcataaaacgcaagcactcgnnnnnnnnngttcatctatatatgtgtggtacctttgggtcaggtgattttcgatcgatccatgtagtt |
200 |
Q |
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| T |
2487814 |
aaaagatgtactcctaaaacgcaagcactcgaaaaaaa--gtccatctatatgcttgtggtacctttgggtcaggtgattt-cgatcgatccatgaagtt |
2487910 |
T |
|
| Q |
201 |
tgtgcatcatctcaatctagaatttgacgagacaacaaatatgataactactcctaagaataacttaatttgaaacttatcttatcttgtatattaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487911 |
tgtgcatcatctcaatctagaatttgacgagacaacaaatatgataactactcctaagaataacttaatttgaaacttatcttatcttgtatattaaaat |
2488010 |
T |
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| Q |
301 |
tctttaacttgaattgttnnnnnnnnttatttagcttaaaaatgaacgtggtgtcaaaattgaatat |
367 |
Q |
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| T |
2488011 |
tctttaacttgaattgttcaaaaaaattctttaacttgaaaatgaacgtggtgtcaaaattgaatat |
2488077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 2488139 - 2488191
Alignment:
| Q |
429 |
accaaagaggagtgattaattaaaggtcagtttccttctatcctaattgaata |
481 |
Q |
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| T |
2488139 |
accaaagaagagtgattaattaaatgtcaatttccttctatcctaatcgaata |
2488191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 27090300 - 27090663
Alignment:
| Q |
1 |
ctcaaattcacccgatctcctatgttttttggtcggtttcgattaccgttggactcagttcacccgacagaacccgacagatgacactcattaaaaccaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
27090300 |
ctcaaattcactcgatctcctatgttttttggtcggtttcgattaccgttggactcagttcatccgacagaactcgacagatgacactcattaaaaccaa |
27090399 |
T |
|
| Q |
101 |
aaaagatgcactcataaaacgcaagcactcgnnnnnnnnngttcatctatatatgtgtggtacctttgggtcaggtgattttcgatcgatccatgtagtt |
200 |
Q |
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|||||||| |||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
27090400 |
aaaagatgtactcctaaaacgcaagcactcgaaaaaaa--gtccatctatatgcttgtggtacctttgggtcaggtgattt-cgatcgatccatgaagtt |
27090496 |
T |
|
| Q |
201 |
tgtgcatcatctcaatctagaatttgacgagacaacaaatatgataactactcctaagaataacttaatttgaaacttatcttatcttgtatattaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090497 |
tgtgcatcatctcaatctagaatttgacgagacaacaaatatgataactactcctaagaataacttaatttgaaacttatcttatcttgtatattaaaat |
27090596 |
T |
|
| Q |
301 |
tctttaacttgaattgttnnnnnnnnttatttagcttaaaaatgaacgtggtgtcaaaattgaatat |
367 |
Q |
| |
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|||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||| |
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| T |
27090597 |
tctttaacttgaattgttcaaaaaaattctttaacttgaaaatgaacgtggtgtcaaaattgaatat |
27090663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 27090725 - 27090777
Alignment:
| Q |
429 |
accaaagaggagtgattaattaaaggtcagtttccttctatcctaattgaata |
481 |
Q |
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|||||||| ||||||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
27090725 |
accaaagaagagtgattaattaaatgtcaatttccttctatcctaatcgaata |
27090777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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