View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_low_5 (Length: 338)
Name: NF11970_low_5
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 1920117 - 1920434
Alignment:
| Q |
4 |
tgatggttttgctagccaggaatcacaaactattgaaaatgttcctctcttgaaaggttataaaagtctaaaattctaaaaacaaaatttggaagtagat |
103 |
Q |
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| T |
1920117 |
tgatggttttgctagccaggaatcacaaactattgaaaatgttcctctcttgaaaggttataaaagtctaaaattctaaaaacaaaatttggaagtagat |
1920216 |
T |
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| Q |
104 |
gtagatggagacattattagtagaagacatgtacatgatagataactctcttgcctctcaattataagaaattcataattcattaatgtttaatcttact |
203 |
Q |
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| T |
1920217 |
gtagatggagacattattagtagaagacatgtacatgatagataactctcttgcctctcaattataagaaattcataattcattaatgtttaatattact |
1920316 |
T |
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| Q |
204 |
actctcgtaatagaaaaaagatatagttttacactaacatccaatagaaataaaatatttgatagctatacttaaaa--agggttacaaaataggtgttc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
1920317 |
actctcgtaatagaaaaaagatatagttttacactaacatccaatagaaat-aaatatttgatagctatacttaaaaagagggttacaaaataggtcttc |
1920415 |
T |
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| Q |
302 |
atgtaaagacggtaagttt |
320 |
Q |
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||||||||| ||||||||| |
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| T |
1920416 |
atgtaaagaaggtaagttt |
1920434 |
T |
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