View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_low_6 (Length: 312)
Name: NF11970_low_6
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 42315025 - 42314743
Alignment:
| Q |
12 |
aaaggcaacaaacttttagaatggatggaataatggtgctaggtccccttgatgaaaatgaagcaatcactggagctggaattattggaatttctgttat |
111 |
Q |
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| T |
42315025 |
aaaggcaacaaacttttagaatggatggaataatggtgctaggtccccttgatgaaaatgaagcaatcactggagctggaattattggaatttctgttat |
42314926 |
T |
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| Q |
112 |
tgcttttgttatgtaagcaacaggcttccttaaatatatatagatagatcagtcattaattgttttaatccattttaagaac-tttaacaacaaaatgga |
210 |
Q |
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| T |
42314925 |
tgcttttgttatgtaagcaacagggttccttaaatatatataaatag---agtcattaattgttttaatccattttaagaacttttaacaac-aaatgta |
42314830 |
T |
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| Q |
211 |
agagnnnnnnnnttacttttcatttttgatgtaggagtaaatatattgactatcaatataattgacttgtgaagtaggtaaagcatg |
297 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314829 |
agagaaaaaaaattacttttcatttttgatgtaggagtaaatatattgactatcaatataattgacttgtgaagtaggtaaagcatg |
42314743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 42324588 - 42324543
Alignment:
| Q |
96 |
ttggaatttctgttattgcttttgttatgtaagcaacaggcttcct |
141 |
Q |
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| T |
42324588 |
ttggaatttctgttattgcttttgccatgtaagaaacagggttcct |
42324543 |
T |
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