View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11970_low_7 (Length: 262)
Name: NF11970_low_7
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 8288 - 8514
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8288 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
8387 |
T |
|
| Q |
116 |
cgcattgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaatttctagttagg |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
8388 |
cgcattgttgttttctattttcagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaag-atttctagttacg |
8486 |
T |
|
| Q |
216 |
tgtgtgttttctcacaatacaagcatta |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8487 |
tgtgtgttttctcacaatacaagcatta |
8514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 47799596 - 47799675
Alignment:
| Q |
121 |
tgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaa |
200 |
Q |
| |
|
||||||||||||| | |||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
47799596 |
tgttgttttctatcttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaa |
47799675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 8721 - 8797
Alignment:
| Q |
130 |
ctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaattt |
206 |
Q |
| |
|
|||||| |||||||| |||||| |||| || ||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
8721 |
ctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaagattaaataattt |
8797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 26802549 - 26802692
Alignment:
| Q |
25 |
actcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttt----------taaccatttgttcaacac |
114 |
Q |
| |
|
|||||||||||| ||||| |||||| || ||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||| || |
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| T |
26802549 |
actcataaaacatcaacatcaacaatttgttaacccaatcagaattattcattccttgaaaccccaatcttttttaaacccataaccatttgttcaaaac |
26802648 |
T |
|
| Q |
115 |
acgcattgttgttttctatttccagtttgtgtttctctttaccaa |
159 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| ||||||| |
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|
| T |
26802649 |
acgc-gtgttgttttctatttatggtttgtgtttctagttaccaa |
26802692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 27132048 - 27131976
Alignment:
| Q |
25 |
actcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatctttt |
97 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||| ||| | ||||||||||||||||||||||||| |
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|
| T |
27132048 |
actcataaaacaacaacatcaacaacttgttaacccaaacaaaatcattcattccttgaaaccccaatctttt |
27131976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 42645573 - 42645800
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42645573 |
acatcacagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
42645672 |
T |
|
| Q |
116 |
cgcattgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaatttctagttagg |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42645673 |
cgcattgttgttttctgtttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaatttctagttacg |
42645772 |
T |
|
| Q |
216 |
tgtgtgttttctcacaatacaagcatta |
243 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
42645773 |
tgtgtgttctctcacaatacaagcatta |
42645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 33688755 - 33688528
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33688755 |
acatcacagactcataaaacaccaacaacgacaacttattaacccaaaccgaattaatcattccttgaaaccccaatcttttaaccatttgttcaacaca |
33688656 |
T |
|
| Q |
116 |
cgcattgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaagattaaagaatttctagttagg |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
33688655 |
cacattgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaattattaaagaaaagctgttaaagattaaaaaatttctagttacg |
33688556 |
T |
|
| Q |
216 |
tgtgtgttttctcacaatacaagcatta |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33688555 |
tgtgtgttttctcacaatacaagcatta |
33688528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 28091641 - 28091687
Alignment:
| Q |
25 |
actcataaaacaccaacaacaacaacttattaacccaaactgaatta |
71 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||| |||||| |
|
|
| T |
28091641 |
actcataaaacaccatcatcaacaacttgttaacccaaacagaatta |
28091687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 1770377 - 1770481
Alignment:
| Q |
97 |
taaccatttgttcaacacacgcat-tgttgttttctatttccagtttgtgtttctctttaccaattctcttgtgaatcattaaagaaaagctgttaaaga |
195 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||| |||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1770377 |
taaccatttgttcaaaacacatctgtgttgttttctattttcagtttgtctttctccttacaaaatctcttgtgaatcattaaagaaaagttgttaaaga |
1770476 |
T |
|
| Q |
196 |
ttaaa |
200 |
Q |
| |
|
||||| |
|
|
| T |
1770477 |
ttaaa |
1770481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 26837039 - 26836958
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatctttt |
97 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||| ||| | |||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
26837039 |
acatcacaaactcataaaacaccaacatcaacaacttgttatctcaaatagaattattcattccttgaaaccccaatttttt |
26836958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 49144995 - 49145070
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaa |
91 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||| |||||| |||| |||||| ||||||||| ||| ||||| |
|
|
| T |
49144995 |
acatcacaaactcataaaacaccaccaacaacaacttgttaacctaaacagaattattcattccttcaaatcccaa |
49145070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 42144624 - 42144670
Alignment:
| Q |
25 |
actcataaaacaccaacaacaacaacttattaacccaaactgaatta |
71 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||| |||||| |
|
|
| T |
42144624 |
actcataaaacaccatcatcaacaacttgttaacccaaacagaatta |
42144670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 23383566 - 23383647
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaatctttt |
97 |
Q |
| |
|
|||||| | ||||||||| || ||||| ||||||||| ||||| |||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
23383566 |
acatcacaaactcataaaccaacaacatcaacaacttgttaactcaaatagaattattcattccttgaaaccccaatttttt |
23383647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 5006153 - 5006077
Alignment:
| Q |
16 |
acatcagagactcataaaacaccaacaacaacaacttattaacccaaactgaattaatcattccttgaaaccccaat |
92 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||| ||| | |||| |||||| |||||| ||||||||||||| |
|
|
| T |
5006153 |
acatcacaaactcataaaacaccaacatcaacaacttgttatctcaaatagaattattcattctttgaaaccccaat |
5006077 |
T |
|
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