View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11970_low_9 (Length: 237)
Name: NF11970_low_9
Description: NF11970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11970_low_9 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 17820925 - 17821145
Alignment:
| Q |
17 |
agcaaggtcatcccagtaaagatttgtagcagctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
116 |
Q |
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| T |
17820925 |
agcaaggtcatcccagtaaagatttgtagcagctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
17821024 |
T |
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| Q |
117 |
aagttagtatagaggtaatccgaaagatttttagcctcttccgatgagttaagggctcctaatgctccgagggaaagtaaaactttgaaccctttttctt |
216 |
Q |
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| T |
17821025 |
aagttagtatagaggtaatcagaaagatttttagcttcttccgatgagttaagggctcctaatgctgcgagggaaagtaaaactttgaaccctttttctt |
17821124 |
T |
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| Q |
217 |
gacagtgttttatttcgggtt |
237 |
Q |
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| T |
17821125 |
gacagtgttttatttcgggtt |
17821145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 17885441 - 17885215
Alignment:
| Q |
17 |
agcaaggtcatcccagtaaagatttgtagcagctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
116 |
Q |
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| T |
17885441 |
agcaaggtcatcccagtaaagattgctacc---tccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
17885345 |
T |
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| Q |
117 |
aagttagtatagaggtaatccgaaagatttttagcctcttccgatgagttaag------ggctcctaatg---ctccgagggaaagtaaaactttgaacc |
207 |
Q |
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| T |
17885344 |
aagttagtatagaggtaatcagcaacatttttagcatcgtctggtgagctaagggagtaggatccagatgcacctccaagggaaagtaaaactttgatcc |
17885245 |
T |
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| Q |
208 |
ctttttcttgacagtgttttatttcgggtt |
237 |
Q |
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| T |
17885244 |
ctttttgttgacagtgttttatttcgggtt |
17885215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 17845089 - 17844863
Alignment:
| Q |
17 |
agcaaggtcatcccagtaaagatttgtagcagctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
116 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17845089 |
agcaaggtcatcccagtaaagatcgctacc---tccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
17844993 |
T |
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| Q |
117 |
aagttagtatagaggtaatccgaaagatttttagcctcttccgatgagttaag------ggctcctaatg---ctccgagggaaagtaaaactttgaacc |
207 |
Q |
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| T |
17844992 |
aagttagtatagaggtaatcagcaacatttttagcatcgtctggtgagctaagggagtaggatccagatgcacctccgatcgaaagtaaaactttgatcc |
17844893 |
T |
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| Q |
208 |
ctttttcttgacagtgttttatttcgggtt |
237 |
Q |
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| T |
17844892 |
ctttttgttgacagtgttttatttcgggtt |
17844863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 17861105 - 17861331
Alignment:
| Q |
17 |
agcaaggtcatcccagtaaagatttgtagcagctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaaga |
116 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17861105 |
agcaaggtcatcccagtaaagatttgtacc---tccttcaatgtcaaaatcaattccatctaaggtaacacttccaagtggaccggattgaccactaagg |
17861201 |
T |
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| Q |
117 |
aagttagtatagaggtaatccgaaagatttttagcctcttccgatgagttaagg------gctcctaatg---ctccgagggaaagtaaaactttgaacc |
207 |
Q |
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| T |
17861202 |
aacttagcatttagataatcagcaacatttttagcatcctctggtgagctaagggagtaagatccaattgcacctccaagggaaagtaaaactttgacac |
17861301 |
T |
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| Q |
208 |
ctttttcttgacagtgttttatttcgggtt |
237 |
Q |
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|||||| |||||| |||||||||||||||| |
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| T |
17861302 |
ctttttgttgacaatgttttatttcgggtt |
17861331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 17904802 - 17904612
Alignment:
| Q |
56 |
aatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatccgaaagatttttagcctct |
155 |
Q |
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| T |
17904802 |
aatggcaaaatcaattccatctaaggtaacacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatca |
17904703 |
T |
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| Q |
156 |
tccgatgagttaagg-----gctcct--aat--gctccgagggaaagtaaaactttgaaccctttttcttgacagtgttttatttcgggtt |
237 |
Q |
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|| | |||| ||||| | | || ||| |||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
17904702 |
tctggtgagctaagggagtagtttctggaatcacctccaagggaaagaaaaactttgacacctttttgttgacagtgttttatttcgggtt |
17904612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 17914807 - 17914750
Alignment:
| Q |
68 |
aataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagta |
125 |
Q |
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| T |
17914807 |
aataccatttaaagtaacacttccaagtggaccaaattgaccattaaggaagttagta |
17914750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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