View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11971_high_1 (Length: 672)

Name: NF11971_high_1
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11971_high_1
NF11971_high_1
[»] chr5 (1 HSPs)
chr5 (19-653)||(3187160-3187794)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 19 - 653
Target Start/End: Original strand, 3187160 - 3187794
Alignment:
Q  19 cacagaatgaagggaactgctgcaaaccaagttaaaatgaaactgaaaggttctggaatctgcagttaacaattcacacaacctttatcaatcattagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187160 cacagaatgaagggaactgctgcaaaccaagttaaaatgaaactgaaaggttctggaatctgcagttaacaattcacacaacctttatcaatcattagat 3187259  T
Q  119 gaatcaaagaaatttgtaaccaacaaaatttacgaatactattaaatttaagaatcaattgcatctaaataagcaattagagatggcagaacaaggaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187260 gaatcaaagaaatttgtaaccaacaaaatttacgaatactattaaatttaagaatcaattgcatctaaataagcaattagagatggcagaacaaggaaaa 3187359  T
Q  219 tgagatataccgctatcagataattgatctcaaacccagtcacatcatcaaggaagaagaacctgatattacagaggaaataataaaaaagatgcaaatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187360 tgagatataccgctatcagataattgatctcaaacccagtcacatcatcaaggaagaagaacctgatattacagaggaaataataaaaaagatgcaaatg 3187459  T
Q  319 tcaatcccaaacttgtctcttttatcaaaatnnnnnnnggccgtctcaaagattgttttatgactcactcgccctactatcaaccttgataaacctcgtt 418  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187460 tcaatcccaaacttgtctcttttatcaaaataaaaaaaggccgtctcaaagattgttttatgactcactcgccctactatcaaccttgataaacctcgtt 3187559  T
Q  419 tcaagtcttttttcaaaattggacttatgtttcttgtgtcacaagtttctatttttacttgaatcggtataggtcgttaagctattggactttaaacttt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187560 tcaagtcttttttcaaaattggacttatgtttcttgtgtcacaagtttctatttttacttgaatcggtataggtcgttaagctattggactttaaacttt 3187659  T
Q  519 gttgaatttgtacaaatccaaaatgaagtgagtgtagactacactagatttataacaagcatggcagaaaaatcgtccaaaatgttcaaaccattgacct 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3187660 gttgaatttgtacaaatccaaaatgaagtgagtgtagactacactagatttataacaagcatgacagaaaaatcgtccaaaatgttcaaaccattgacct 3187759  T
Q  619 accctctacattatttgttgttctatgcttgtccc 653  Q
    |||||||||||||||||||||||||||||||||||    
T  3187760 accctctacattatttgttgttctatgcttgtccc 3187794  T

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