View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_high_11 (Length: 375)
Name: NF11971_high_11
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 204 - 357
Target Start/End: Original strand, 26710882 - 26711036
Alignment:
| Q |
204 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagaataaa-gagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
302 |
Q |
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| T |
26710882 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagtataaaagagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
26710981 |
T |
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| Q |
303 |
atataaagctatttccatgtcggcatctctatatcagtagctagaagtaagtctt |
357 |
Q |
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| T |
26710982 |
atataaagctatttctatgtcggcacctctatatcagtagctagaagtaagtctt |
26711036 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26710685 - 26710783
Alignment:
| Q |
1 |
attcaaaatattaacaaggatgtacataaacacaatagatgcaagactaacacatgacccacatggttagaatggacagacctactctgataccactaa |
99 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||| | | ||||| |||||||| ||||||||||||||| |
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| T |
26710685 |
attcaaaatattaagaaggatgtacacaaacacaacagatgcaagactgacacatgacccacacgatctgaatgaacagacctgctctgataccactaa |
26710783 |
T |
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