View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_high_19 (Length: 302)
Name: NF11971_high_19
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 13467871 - 13467962
Alignment:
| Q |
196 |
atccaaaacaacaaaatccaagtagtcacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccctatcagtcagttcat |
287 |
Q |
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| T |
13467871 |
atccaaaacaacaaaatccaactagtgacttaacctatgttcatgtatgtcccttgacaattgctattttcaaaccatatcagtcagttcat |
13467962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 13471842 - 13471991
Alignment:
| Q |
1 |
taaattcaagtattggctaactaacaaatatgcaattcaatgttttaaaagggatcgaaacaaaataaatctttgatgatcacagagttcatagagcaca |
100 |
Q |
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| T |
13471842 |
taaattcatgtcttggctaactaacaaatatgcaattcaatttcttaaaagtgatcaaagcaaaattaatcattgataatcacagagctcatagagcaca |
13471941 |
T |
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| Q |
101 |
atatgtcactcaccaaactagttgcaaaacctatgaacatatacacttcaa |
151 |
Q |
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| T |
13471942 |
atatat-gcttaccaaactagttgcaaaacctgtgagcagatatacttcaa |
13471991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 13472021 - 13472058
Alignment:
| Q |
249 |
ttgacaattgctattttcaaaccctatcagtcagttca |
286 |
Q |
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| T |
13472021 |
ttgacaattgctattttcaaatcctatcagtcagttca |
13472058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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