View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_high_27 (Length: 241)
Name: NF11971_high_27
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34033156 - 34032932
Alignment:
| Q |
1 |
catggaactaccaaaaggctcatgagttgaagtttgtatgacatggtctcccaaaggaacataatctgctactatttcatcacaagaacccatgtaattc |
100 |
Q |
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| T |
34033156 |
catggcactaccaaaaggctcatgagttgaagtttgtatgacatggtctcccaaaggaacatagtctgctactatttcatcacaagaacccatgtaattc |
34033057 |
T |
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| Q |
101 |
caagaatgagtattatgaatatagtcgagatcagtgattgtatcactctaaagaccaactatacacatatttgaatattggttgctctgatgagccttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34033056 |
caagaatgagtattatgaatatagtcgagatcagtgattgtatcactctaaagatcaactatacacatatttgaatattggttgctctgatgagcctccc |
34032957 |
T |
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| Q |
201 |
tctatttctcaggcagtacaaaatc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
34032956 |
tctatttctcaggcagtacaaaatc |
34032932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 11865700 - 11865893
Alignment:
| Q |
10 |
accaaaaggctcatgagttgaagtttgtatgacatggtctcccaaaggaacataatctgctactatttcatcacaagaacccatgtaattccaagaatga |
109 |
Q |
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|||||||||||| || ||||| || || ||||||| ||||||||||||| | | |||||||||| |||| || | ||| |||| ||||||||||| |
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| T |
11865700 |
accaaaaggctcctgggttgacgtgtgggtgacatgatctcccaaaggaagagagtctgctactacttcaacaaaggaagtcatgcaattccaagaagtg |
11865799 |
T |
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| Q |
110 |
gtattatgaatatagtcgagatcagtgattgtatcactctaaagaccaactatacacatatttgaatattggttgctctgatgagccttcctct |
203 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||| |
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| T |
11865800 |
gtattatttatatagtagagatcagtgattgcatcactccaaagaccaactatacgcatatccaaatattggttgctctaatgagcctccctct |
11865893 |
T |
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