View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_high_28 (Length: 238)
Name: NF11971_high_28
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13467706 - 13467480
Alignment:
| Q |
1 |
tatgttggaatttgatcccttaaacactttgaagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13467706 |
tatgttggaatttgagcccttaaacactttgaagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgattaaaatttaagc |
13467607 |
T |
|
| Q |
101 |
ccttaaacatttccatttaatgtttttggttaaatttaggcctttaagttgaagaccttgtcttgtagcccagcttgcataggctataggagccggccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13467606 |
ccttaaacatttccatttaatgtttttggttaaatttaggcctttaagttgaagaccttgtcttgtagcctagcttgcataggctataggagccggccct |
13467507 |
T |
|
| Q |
201 |
ggtgacgatattaaccatgaaaatgat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
13467506 |
ggtgacgatattaaccatgaaaatgat |
13467480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 5590531 - 5590643
Alignment:
| Q |
18 |
ccttaaacactttg-aagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccat |
116 |
Q |
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||||||| |||||| ||||||| ||||||| |||||| || | ||||||| ||||||||||||||||||| |||| |||| ||||| || ||||| || |
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| T |
5590531 |
ccttaaatactttggaagccctcaaaatttaggatttatttacataattatgttcataatttcatatttgattaatatttgggccctcaagcatttttat |
5590630 |
T |
|
| Q |
117 |
ttaatgtttttgg |
129 |
Q |
| |
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||||||| ||||| |
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| T |
5590631 |
ttaatgtgtttgg |
5590643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 38285002 - 38285091
Alignment:
| Q |
40 |
aaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccatttaatgtttttgg |
129 |
Q |
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|||| ||||||||| ||| ||||||||||| | ||||||| ||||| ||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
38285002 |
aaaacttgggatttattgccataattaagtttagaatttcagatttgattaaaatttggccccttgaacatttttatttaatgtttttgg |
38285091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 33331769 - 33331879
Alignment:
| Q |
19 |
cttaaacactttgaagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccattt |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||| |||| | ||||||| ||||| |||||| || ||||||| ||||||| | || |
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| T |
33331769 |
cttaaacactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttctaatt |
33331868 |
T |
|
| Q |
119 |
aatgtttttgg |
129 |
Q |
| |
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||||||||||| |
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| T |
33331869 |
aatgtttttgg |
33331879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 22729021 - 22728909
Alignment:
| Q |
18 |
ccttaaacactttg-aagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccat |
116 |
Q |
| |
|
||||||| |||||| ||||||| ||||||| |||||| || | ||||||| ||||||||||||||||||| |||| |||| ||||| || ||||| || |
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| T |
22729021 |
ccttaaatactttggaagccctcaaaatttaggatttatttacataattatgttcataatttcatatttgattaatatttgggccctcaagcatttttat |
22728922 |
T |
|
| Q |
117 |
ttaatgtttttgg |
129 |
Q |
| |
|
||||||| ||||| |
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|
| T |
22728921 |
ttaatgtgtttgg |
22728909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 22720596 - 22720498
Alignment:
| Q |
31 |
gaagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccatttaatgtttttgg |
129 |
Q |
| |
|
|||||||| ||| ||| |||||| ||| ||||||||||||||||||||| ||||| |||||| || ||||| || ||||| ||||||||| ||||| |
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| T |
22720596 |
gaagccctcaaattttaggatttattggcataattaagttcataatttcaaatttgattaaaagttgggccctcaaccatttttatttaatgtgtttgg |
22720498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 9327058 - 9327128
Alignment:
| Q |
59 |
tataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccatttaatgtttttgg |
129 |
Q |
| |
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|||||||||||||| ||||| | ||||| |||||||||| | ||| |||||||| |||||||| |||||| |
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| T |
9327058 |
tataattaagttcaaaattttaaatttgattaaaatttaggtgcttgaacatttctatttaatgattttgg |
9327128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 3504683 - 3504622
Alignment:
| Q |
35 |
ccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgtttaaaattt |
96 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
3504683 |
ccctaataatttgggatttattgatataattaagttcagaatttcatatttcattaaaattt |
3504622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 38534894 - 38534822
Alignment:
| Q |
55 |
ttgatataattaagttcataatttcatatttgtttaaaatttaagcccttaaacatttccatttaatgttttt |
127 |
Q |
| |
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||||| ||||||| || | ||||| | ||||| |||||||||| ||||||||||||||| ||| ||| ||||| |
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| T |
38534894 |
ttgatgtaattaattttaaaattttagatttgattaaaatttaggcccttaaacatttctattcaatattttt |
38534822 |
T |
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