View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11971_high_30 (Length: 236)
Name: NF11971_high_30
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 43805868 - 43805651
Alignment:
| Q |
15 |
agttccctctgcctcaaaggcccaaatgcttcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43805868 |
agttccctctgcctcaaaggcccaaacgattcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtatt |
43805769 |
T |
|
| Q |
115 |
cagcaaaaaccaaccctttagaaccataagaaagataatgggtggcttcaagttttggacgggaagagaaaacaacgtcgtgtgttttgaggaattgttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43805768 |
cagcaaaaaccaaccctttagaaccataagaaagataatgggtggcttcaagttttggacgggaagagaaaacaacgtcgtgtgttttgaggaattgttc |
43805669 |
T |
|
| Q |
215 |
tgctgctgaagaggaaga |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
43805668 |
tgctgctgaagaggaaga |
43805651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 30005955 - 30005855
Alignment:
| Q |
45 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataag |
144 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||||||| ||||||| | |||||||||| | ||| || |||| |||| ||| |||||| |||||||||| |
|
|
| T |
30005955 |
tcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataag |
30005856 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
30005855 |
a |
30005855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 29999517 - 29999420
Alignment:
| Q |
45 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccata |
142 |
Q |
| |
|
|||||||| |||||||| | ||| | ||||||||||| ||||||||| | |||||||| | ||| || |||| |||| |||||||||||||||||| |
|
|
| T |
29999517 |
tcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaaccata |
29999420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 30071029 - 30071126
Alignment:
| Q |
45 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccata |
142 |
Q |
| |
|
|||||||| |||||||| | ||| | ||||||||||| ||||||| | |||||||||| | ||| || |||| |||||| | |||||| |||||||| |
|
|
| T |
30071029 |
tcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaaccata |
30071126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 30045199 - 30045299
Alignment:
| Q |
45 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataag |
144 |
Q |
| |
|
|||||||| |||||||| | ||| | ||||||||||| ||||||| | |||||||||| | ||| || ||| |||| ||| |||||| |||||||||| |
|
|
| T |
30045199 |
tcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaaccataag |
30045298 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
30045299 |
a |
30045299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University