View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_12 (Length: 366)
Name: NF11971_low_12
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 36836035 - 36836132
Alignment:
| Q |
104 |
gaagtgaatttctttactaaaaaatgaaattgctttcttggacatgtctttttctgtctcagtgagtttgaaaggagggtgttgttgtgtctttcaatcc |
203 |
Q |
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| T |
36836035 |
gaagtgaatttctttactaaaaaatgaaattgctttcttggacatgtctttttctgtctcagtgagtttgaaaggaggg---tgttgtgtctttcaatcc |
36836131 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 36836207 - 36836279
Alignment:
| Q |
279 |
cactttagaaatgaaataaaa--ggtttctgtaagcagtgttggccacagagaaagataatagggcaaagatt |
349 |
Q |
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| T |
36836207 |
cactttagaaatgaaataaaacaggtttctgtaagcagtgttggcgacagagaaagataatagggcaaagatt |
36836279 |
T |
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