View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_13 (Length: 365)
Name: NF11971_low_13
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 39097589 - 39097931
Alignment:
| Q |
1 |
aggattatctaacatgttgttacttatgtgcatctaagttgagtatgaaaatacacaaaagatagagccctttaataattgtaaggaccacaacctgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39097589 |
aggattatctaacatgttgttacttatgtgcatctaagttgagtatgaaaatacacaaaagatagagccctttaataattgtaaggaccacaacctgcca |
39097688 |
T |
|
| Q |
101 |
cgcatgcaaaatagagtgaaagaataattcctcacacgagtctttgcttaaagatgagcactctggcaaacaattgggtgaatgataggttctctcccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39097689 |
cgcatgcaaaatagagtgaaagaataattcctcacacgagtctttgcttaaagatgagcactctggcaaacaattgggtgaatgataggttctctcccat |
39097788 |
T |
|
| Q |
201 |
attggttaaaattgacaaatgaactttaaaaaggtttggtcgacttctcaaaataattctttatatctataaattgttaaacaaaaagttgcttcaatat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39097789 |
attggttaaaattgacaaatgaactttaaaaaggtttggtcgacttctcaaaataattctttatatctataaattattaaacaaaaagttgcttcaatat |
39097888 |
T |
|
| Q |
301 |
caagaatatctctacattaccccttctttcagattgcataata |
343 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
39097889 |
caagaatatctctacgttaccccatctttcagattgcataata |
39097931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 195 - 321
Target Start/End: Original strand, 39194080 - 39194206
Alignment:
| Q |
195 |
tcccatattggttaaaattgacaaatgaactttaaaaaggtttggtcgacttctcaaaataattctttatatctataaattgttaaacaaaaagttgctt |
294 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39194080 |
tcccatattggttaaaattgacaaatgaactttagaaaggtttggtcgacttctcaaaaaaattctttatatctataaattgttaaacaaaaagttgctt |
39194179 |
T |
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| Q |
295 |
caatatcaagaatatctctacattacc |
321 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
39194180 |
caatatgaagaatatctctacattacc |
39194206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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