View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_14 (Length: 347)
Name: NF11971_low_14
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 39502902 - 39502720
Alignment:
| Q |
19 |
gctaatttactccttttttctatcaaggttgagggagcaccattcaaagaaggatccatttcaggatggtggtggtgttcatgttgatccgaacagagtg |
118 |
Q |
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| T |
39502902 |
gctaatttactccttttttctatcaaggttgagggagcaccattcaaagaaggatccatttcaggatggtggtggtgttcatgttgatccgaacagagtg |
39502803 |
T |
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| Q |
119 |
acatacacatttgaagtggcacaccttcgtctacgatggaagtggcacacacagatccaaaagattcaggtatctctccacac |
201 |
Q |
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| T |
39502802 |
acatacacatttgaagtggcacaccttcgtctacgatggaagtggcacacacagatacaaaggattcatgtatctctccacac |
39502720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 39490259 - 39490121
Alignment:
| Q |
197 |
cacacaagctattgaaagtttgaaactcaaatctctacatcagttaagaaaaataaacggacatttttaccataaaacactttatcctcaacgataacgn |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39490259 |
cacacaagctattgaaagtttgaaactcaaatctctacatcagttaagaaaaataaacggacatttttaccataaaacactttatcctcaacgataacgt |
39490160 |
T |
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| Q |
297 |
nnnnnnagggttgtaaatactggtcggtcttgttcatct |
335 |
Q |
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| T |
39490159 |
ttttttagggttgtaaatattggtcggtcttgttcatct |
39490121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 39501449 - 39501311
Alignment:
| Q |
197 |
cacacaagctattgaaagtttgaaactcaaatctctacatcagttaagaaaaataaacggacatttttaccataaaacactttatcctcaacgataacgn |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39501449 |
cacacaagctattgaaagtttgaaactcaaatctctacatcagttaagaaaaataaacggacatttttaccataaaacactttatcctcaacgataacgt |
39501350 |
T |
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| Q |
297 |
nnnnnnagggttgtaaatactggtcggtcttgttcatct |
335 |
Q |
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| T |
39501349 |
ttttttagggttgtaaatattggtcggtcttgttcatct |
39501311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 39488787 - 39488724
Alignment:
| Q |
34 |
ttttctatcaaggttgagggagcaccattcaaagaa--ggatccatttcaggatggtggtggtg |
95 |
Q |
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|||||||||| | |||||| |||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
39488787 |
ttttctatcatgattgaggcagcaccattcaaagaagtggacccatttcaggatggtggtggtg |
39488724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 40129159 - 40129195
Alignment:
| Q |
177 |
aaaagattcaggtatctctccacacaagctattgaaa |
213 |
Q |
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| T |
40129159 |
aaaagattcaggtatctttccactcaagctattgaaa |
40129195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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