View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_16 (Length: 332)
Name: NF11971_low_16
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 16542475 - 16542797
Alignment:
| Q |
17 |
aaaactacaattgttgtttgctttggtattaaacaatgagtacaagggggtactcaaacccttacaaaataaatctttatatgctttttaaacatacaag |
116 |
Q |
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| T |
16542475 |
aaaactacaatagttgtttgctctggtattaaacaatgagtacaagggggtactcaaacccttacaaaataaatctttatatgctttttaaacatacaag |
16542574 |
T |
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| Q |
117 |
aggattacaataccaattagaaaacacaaagctagatatctctaatgaagaagcatgaccaatttccaatttctccaagaaatccacaattggctgtctt |
216 |
Q |
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| T |
16542575 |
aggattacaataccaattagaaaacacaaagctagatatctcttatgaagaagcatgaccaatttccaatttctccaacaaacccagaattggctgtctt |
16542674 |
T |
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| Q |
217 |
tgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatccatctccaatatgtcacaactttca-------tcgca |
309 |
Q |
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| T |
16542675 |
tgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatccatctccaatatgtcacaactttcatctttattcgca |
16542774 |
T |
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| Q |
310 |
accatttgtctagcacattcttc |
332 |
Q |
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| T |
16542775 |
accatttgtctagcacattcttc |
16542797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 16533726 - 16533943
Alignment:
| Q |
89 |
atctttatatgctttttaaacatacaagaggattacaataccaattagaaaacacaaagctagatatctctaatgaagaagcatgaccaatttccaattt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16533726 |
atctttatatgctttttaaacatacaagaggattacaatattaattagaaaacacaaagctagatatctcttatgaagaagcatgaccaatttccaattt |
16533825 |
T |
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| Q |
189 |
ctccaagaaatccacaattggctgtctttgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatccatctccaa |
288 |
Q |
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| T |
16533826 |
ctccaacaaacccagaattggctgtctttgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatccatctccaa |
16533925 |
T |
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| Q |
289 |
tatgtcacaactttcatc |
306 |
Q |
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| T |
16533926 |
tatgtcacaactttcatc |
16533943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 16532812 - 16532892
Alignment:
| Q |
17 |
aaaactacaattgttgtttgctttggtattaaacaatgagtacaagggggtactcaaacccttacaaaataaatctttata |
97 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16532812 |
aaaactacaatagttgtttgctctggtattaaacaatgagtacaagggggtactcaaacccttacaaaataaatctttata |
16532892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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