View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_17 (Length: 322)
Name: NF11971_low_17
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 35551171 - 35551450
Alignment:
| Q |
19 |
caactggctaataggagattgttactggagcctctcagccttcctttctattttccaatatatttttctttctggaatctttctttccattccgaattaa |
118 |
Q |
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| T |
35551171 |
caactggctaataggagattgttactggagcctctcagccttcctttctatttttcaatatctttttctttctggaatctttctttccattccgaattaa |
35551270 |
T |
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| Q |
119 |
caagggtcaattcccaacctattcctaaaggaatctaggtgccagaaatatcacaacgcgaggattgcagctgtttgttgcagcgaacatgtggaacgac |
218 |
Q |
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| T |
35551271 |
caagggtcaattcccaacctattcctaaaggaatctaggtgccagaaatatcacaacgtgagga-------------ttgcagcaaacatgtggaacgac |
35551357 |
T |
|
| Q |
219 |
cgtcgagattcaccaacgatttattagttccctttaccttaccaatgttctatattttcctgttttttccttcaatgtcatttttgtgcctat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35551358 |
cgtcgagattcaccaacgatttattagttccctttaccttaccaatgttctatattttcctgttttttccttcaatctcatttttgtgcctat |
35551450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 19294088 - 19294194
Alignment:
| Q |
23 |
tggctaataggagattgttactggagcctctcagccttcctttctattttccaatatatttttctttctggaatctttctttccattccgaattaacaag |
122 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19294088 |
tggctaataggagatctttactggagcctctcagccttcctttctattttccaagatctttttctttctggaatctttctttccattccgaattaacaag |
19294187 |
T |
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| Q |
123 |
ggtcaat |
129 |
Q |
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| T |
19294188 |
ggccaat |
19294194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 19294223 - 19294326
Alignment:
| Q |
146 |
aaggaatctaggtgccagaaatatcacaacgcgaggattgcagctgtttgttgcagcgaacatgtggaacgaccgtcgagattcaccaacgatttattag |
245 |
Q |
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|||| ||| |||||||| ||||||||| | ||||||||||||||||||| ||||| || || ||||| |||||||||||| || || | ||||||| |
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| T |
19294223 |
aagggatcgaggtgccacaaatatcacggcacgaggattgcagctgtttgctgcag---acgtgcggaacatccgtcgagattcgcccacaagttattag |
19294319 |
T |
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| Q |
246 |
ttccctt |
252 |
Q |
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||||||| |
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| T |
19294320 |
ttccctt |
19294326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 13040685 - 13040626
Alignment:
| Q |
58 |
cttcctttctattttccaatatatttttctttctggaatctttctttccattccgaatta |
117 |
Q |
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||||||||||||||||||| || | ||||||| |||||||||| ||||| |||||||||| |
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| T |
13040685 |
cttcctttctattttccaagatctgtttctttatggaatctttttttcccttccgaatta |
13040626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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