View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_18 (Length: 315)
Name: NF11971_low_18
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 2552050 - 2551746
Alignment:
| Q |
1 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattatattcaacaggattggttaaccatgaagatgtagatgcgcttctag |
100 |
Q |
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| T |
2552050 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattataatcaacaggattggttaaccatgaagatgtagatgcgcttctag |
2551951 |
T |
|
| Q |
101 |
ttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcatgaagaatttcatggattataggatcacttatttc |
200 |
Q |
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| T |
2551950 |
ttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcatgaagaatttcatggattataggatcacttatttc |
2551851 |
T |
|
| Q |
201 |
aatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttggatgatatttgaatgatcgagtaaacccgactttgtt |
300 |
Q |
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| T |
2551850 |
aatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttggatgatatttgaatgatcgagtaaacccgactttgtt |
2551751 |
T |
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| Q |
301 |
ctctg |
305 |
Q |
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||||| |
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| T |
2551750 |
ctctg |
2551746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2562843 - 2562760
Alignment:
| Q |
1 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattata---ttcaacaggattggttaaccatgaa |
81 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||| |||||| |||||||||||| |||| |
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| T |
2562843 |
tcagaatccatctcaaccaacaaccttgttctagatgagacattttcctcatcataatcatcaacatgattggttaaccttgaa |
2562760 |
T |
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