View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11971_low_24 (Length: 262)
Name: NF11971_low_24
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 5401167 - 5400933
Alignment:
| Q |
14 |
aggtgctcgtagggactagaagcgaaggatcgcattgctttgtccatctttgctcaaaatttgttaacacatcccaagcagcctcaccaataacacaagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401167 |
aggtgctcgtagggactagaagcgaaggatcgcattgctttgtccatctttgctcaaaatttgttaacacatcccaagcagcctcaccaataacacaagc |
5401068 |
T |
|
| Q |
114 |
atgagcatcatgccaaggcactcttggtcctcctttgttaaggtttgcttcttgaatgtttggttggtaaaaatcataacaatgtgattccttaatgagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401067 |
atgagcatcatgccaaggcactcttggtcctcctttgttaaggtttgcttcttgaatgtttggttggtaaaaatcataacaatgtgattccttaatgagt |
5400968 |
T |
|
| Q |
214 |
gtttgaaacaatgaatgttgttcagtatcatatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400967 |
gtttgaaacaatgaatgttgttcagtatcatatct |
5400933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 43052684 - 43052907
Alignment:
| Q |
24 |
agggactagaagcgaaggatcgcattgctttgtccatctttgctcaaaatttgttaacacatcccaagcagcctcaccaataacacaagcatgagcatca |
123 |
Q |
| |
|
|||||||||||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
43052684 |
agggactagaagagacgaatcacattgctttgtccatctttgttcaaaattggttaaaacatcccaagccgcctcgccagtaacacaagcatgagcatca |
43052783 |
T |
|
| Q |
124 |
tgccaaggcactcttggtcctcctttgttaaggtttgcttcttgaatgtttggttggtaaaaatcataacaatgtgattccttaatgagtgtttgaaaca |
223 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||| | ||| || |||||||| ||||| ||||||| |||||||||||| | | ||||||| |||| |
|
|
| T |
43052784 |
tgccaaggctctcttggacctcctttgttgaggctagctcctgcaatgtttgtctggtagaaatcatggtaatgtgattcctgagtaagtgtttcgaaca |
43052883 |
T |
|
| Q |
224 |
atgaatgttgttcagtatcatatc |
247 |
Q |
| |
|
| ||||||| || |||||||||| |
|
|
| T |
43052884 |
aagaatgtttctcggtatcatatc |
43052907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University