View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_27 (Length: 250)
Name: NF11971_low_27
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 39489672 - 39489908
Alignment:
| Q |
14 |
agaccttgtacgttcgttcatcagtgcctgtactatcatccccaacagagaaactatcaccaaaatgtgaaagaacagcgaagttgttagactgactcaa |
113 |
Q |
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| T |
39489672 |
agaccttttacgttcgttcatcagtgcctgtactatcatccccaacagagaaactatcaccaaaatgtgaaagaacagcgaagttgttagactgactcaa |
39489771 |
T |
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| Q |
114 |
ggactgcagggtatggagtatctcacttttttcatatcttctttttgtaaccatcaaaaggaacatacatgtttatctacaacttttagctaactttgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39489772 |
ggactgcagggtatggagtatctcacttttttcatatcttctttttgtaaccatcaaaaggaacatacatgtttatctacaacttttagctaactttgtt |
39489871 |
T |
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| Q |
214 |
cgccatttccccagtggttggttggttggtttgattc |
250 |
Q |
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| T |
39489872 |
cgccatttccccagtggttggttggttggtttgattc |
39489908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 39500862 - 39501098
Alignment:
| Q |
14 |
agaccttgtacgttcgttcatcagtgcctgtactatcatccccaacagagaaactatcaccaaaatgtgaaagaacagcgaagttgttagactgactcaa |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39500862 |
agaccttttacgttcgttcatcagtgcctgtactatcatccccaacagagaaactatcaccaaaatgtgaaagaacagcgaagttgttagactgactcaa |
39500961 |
T |
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| Q |
114 |
ggactgcagggtatggagtatctcacttttttcatatcttctttttgtaaccatcaaaaggaacatacatgtttatctacaacttttagctaactttgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39500962 |
ggactgcagggtatggagtatctcacttttttcatatcttctttttgtaaccatcaaaaggaacatacatgtttatctacaacttttagctaactttgtt |
39501061 |
T |
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| Q |
214 |
cgccatttccccagtggttggttggttggtttgattc |
250 |
Q |
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| T |
39501062 |
cgccatttccccagtggttggttggttggtttgattc |
39501098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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