View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11971_low_3 (Length: 637)

Name: NF11971_low_3
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11971_low_3
NF11971_low_3
[»] chr6 (11 HSPs)
chr6 (1-619)||(6671300-6671919)
chr6 (437-513)||(11180277-11180353)
chr6 (437-498)||(12779417-12779478)
chr6 (440-498)||(1567182-1567240)
chr6 (439-498)||(32719496-32719555)
chr6 (451-513)||(29241966-29242028)
chr6 (435-499)||(33590444-33590508)
chr6 (451-513)||(1029180-1029241)
chr6 (435-513)||(20820647-20820724)
chr6 (435-473)||(28552002-28552040)
chr6 (437-473)||(22788636-22788672)
[»] chr5 (17 HSPs)
chr5 (1-275)||(36854805-36855076)
chr5 (435-513)||(38568489-38568567)
chr5 (440-498)||(35683595-35683653)
chr5 (440-513)||(10842931-10843004)
chr5 (435-498)||(10437887-10437950)
chr5 (451-513)||(4649120-4649182)
chr5 (435-499)||(14570157-14570221)
chr5 (440-498)||(5772841-5772899)
chr5 (451-513)||(38302486-38302548)
chr5 (452-513)||(2020867-2020928)
chr5 (444-509)||(2679992-2680057)
chr5 (437-498)||(18670934-18670995)
chr5 (445-498)||(18675839-18675892)
chr5 (440-483)||(15974256-15974299)
chr5 (451-513)||(1658063-1658125)
chr5 (451-513)||(41694863-41694925)
chr5 (442-474)||(10955814-10955846)
[»] chr3 (23 HSPs)
chr3 (437-513)||(33909067-33909142)
chr3 (440-513)||(5939903-5939976)
chr3 (440-513)||(33944761-33944834)
chr3 (440-513)||(37674262-37674335)
chr3 (435-499)||(49183592-49183656)
chr3 (443-513)||(53664724-53664794)
chr3 (440-513)||(38639475-38639548)
chr3 (448-513)||(55439470-55439535)
chr3 (440-513)||(44400594-44400669)
chr3 (447-514)||(11609348-11609415)
chr3 (451-513)||(36796309-36796371)
chr3 (451-513)||(41962108-41962170)
chr3 (440-498)||(50948106-50948164)
chr3 (435-498)||(3537109-3537172)
chr3 (451-513)||(3043251-3043313)
chr3 (451-513)||(25428556-25428618)
chr3 (451-513)||(43237177-43237239)
chr3 (443-497)||(51684526-51684580)
chr3 (451-514)||(24242225-24242288)
chr3 (435-498)||(27197154-27197217)
chr3 (451-498)||(42583404-42583451)
chr3 (451-513)||(43007629-43007691)
chr3 (451-503)||(33982852-33982904)
[»] chr2 (23 HSPs)
chr2 (435-503)||(30072525-30072593)
chr2 (440-513)||(1364719-1364792)
chr2 (435-498)||(31082717-31082780)
chr2 (435-513)||(18589965-18590043)
chr2 (440-497)||(26905706-26905763)
chr2 (435-498)||(4003329-4003392)
chr2 (440-498)||(11514945-11515003)
chr2 (437-499)||(21626024-21626086)
chr2 (440-498)||(34757506-34757564)
chr2 (451-510)||(18826365-18826424)
chr2 (435-513)||(5322235-5322313)
chr2 (440-498)||(6656019-6656077)
chr2 (440-498)||(13018600-13018658)
chr2 (440-498)||(15555467-15555525)
chr2 (451-498)||(38293785-38293832)
chr2 (454-513)||(39204828-39204887)
chr2 (451-513)||(4041850-4041912)
chr2 (451-513)||(8555909-8555971)
chr2 (451-513)||(13766071-13766133)
chr2 (440-494)||(40211909-40211963)
chr2 (443-513)||(41100229-41100299)
chr2 (440-498)||(43572670-43572728)
chr2 (451-513)||(44020238-44020302)
[»] chr1 (21 HSPs)
chr1 (439-513)||(2909025-2909099)
chr1 (440-513)||(5584391-5584464)
chr1 (440-513)||(4204898-4204971)
chr1 (443-498)||(36886771-36886826)
chr1 (435-497)||(36269645-36269707)
chr1 (440-513)||(46001454-46001526)
chr1 (438-513)||(33324521-33324595)
chr1 (440-498)||(29091988-29092046)
chr1 (440-496)||(27255112-27255168)
chr1 (440-499)||(52068262-52068321)
chr1 (451-513)||(23871596-23871658)
chr1 (443-511)||(39887051-39887119)
chr1 (450-513)||(7915399-7915462)
chr1 (440-498)||(17760597-17760656)
chr1 (443-498)||(34154453-34154508)
chr1 (440-499)||(37649738-37649797)
chr1 (451-513)||(33991427-33991489)
chr1 (451-513)||(42162186-42162248)
chr1 (435-513)||(32287467-32287547)
chr1 (441-482)||(38795452-38795493)
chr1 (451-496)||(42488760-42488805)
[»] scaffold0053 (1 HSPs)
scaffold0053 (440-513)||(29131-29204)
[»] chr7 (21 HSPs)
chr7 (435-498)||(38505451-38505514)
chr7 (440-499)||(2826368-2826427)
chr7 (451-498)||(19791593-19791640)
chr7 (440-498)||(15749071-15749129)
chr7 (435-497)||(43741609-43741671)
chr7 (440-497)||(32650502-32650559)
chr7 (435-498)||(30080873-30080936)
chr7 (451-513)||(23620926-23620988)
chr7 (442-498)||(4058263-4058319)
chr7 (440-484)||(45940522-45940566)
chr7 (443-498)||(4125851-4125906)
chr7 (435-513)||(38137826-38137905)
chr7 (450-509)||(42113089-42113148)
chr7 (435-494)||(43348345-43348404)
chr7 (440-498)||(16805689-16805747)
chr7 (451-513)||(18788786-18788848)
chr7 (451-513)||(23325734-23325796)
chr7 (440-513)||(17884314-17884386)
chr7 (443-496)||(34670099-34670152)
chr7 (453-502)||(46449072-46449121)
chr7 (443-491)||(42253868-42253916)
[»] scaffold0031 (1 HSPs)
scaffold0031 (447-513)||(93635-93701)
[»] chr4 (14 HSPs)
chr4 (440-498)||(33500421-33500479)
chr4 (443-513)||(45971448-45971518)
chr4 (435-513)||(51153653-51153731)
chr4 (440-497)||(49668225-49668282)
chr4 (440-498)||(16318518-16318576)
chr4 (440-498)||(28175586-28175644)
chr4 (443-497)||(41709242-41709296)
chr4 (440-498)||(45823456-45823514)
chr4 (451-513)||(48830948-48831010)
chr4 (440-500)||(12708956-12709016)
chr4 (442-498)||(38136958-38137014)
chr4 (451-498)||(16535592-16535639)
chr4 (440-498)||(29114355-29114414)
chr4 (451-513)||(37756846-37756908)
[»] chr8 (14 HSPs)
chr8 (435-513)||(34335927-34336006)
chr8 (435-498)||(79730-79794)
chr8 (453-513)||(29611878-29611938)
chr8 (440-499)||(8228434-8228493)
chr8 (444-498)||(14581873-14581927)
chr8 (440-498)||(21173979-21174037)
chr8 (440-498)||(26772763-26772821)
chr8 (448-513)||(1840335-1840400)
chr8 (442-498)||(6943557-6943613)
chr8 (444-491)||(43007589-43007636)
chr8 (451-513)||(31297480-31297542)
chr8 (435-473)||(41866233-41866271)
chr8 (451-512)||(13865224-13865285)
chr8 (444-497)||(36837599-36837652)
[»] scaffold0952 (1 HSPs)
scaffold0952 (451-513)||(3805-3867)
[»] scaffold0128 (1 HSPs)
scaffold0128 (440-498)||(26280-26338)
[»] scaffold0136 (1 HSPs)
scaffold0136 (440-498)||(2144-2202)
[»] scaffold0024 (1 HSPs)
scaffold0024 (435-474)||(45034-45073)
[»] scaffold0388 (1 HSPs)
scaffold0388 (435-473)||(6996-7034)
[»] scaffold0248 (1 HSPs)
scaffold0248 (440-469)||(317-346)


Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 6671919 - 6671300
Alignment:
Q  1 gtggagaagtggcatggggagattgggaattgagataaggagaaataagatggggagaacgagaatggtgacaatgtacnnnnnnnnggagtgtgaaatt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||    
T  6671919 gtggagaagtggcgtggggagattgggaattgagataaggagaaataagatggggagaacgagaatggcgacaatgtacgtttttttggagtgtgaaatt 6671820  T
Q  101 gaattgttggaattgcaagtttgacatcttcgacgtggaatggtttactggtgatggagggaggagatggagattttgtggagttttggtggatgaggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6671819 gaattgttggaattgcaagtttgacatcttcgacgtggaatggtttggtggtgatggagggaggagatggagattttgtggagttttggtggatgaggtt 6671720  T
Q  201 ggtcatcataggacaaggaatccttttgtatcagtttgtaagccaccacggcgagtgaatgatttggttgtggtttaggcagagagaaatggtgcaagt- 299  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||     
T  6671719 ggtcatcataggacgaggaatccttttgtatcagtttgtaagccagcacggcgagtgaatgatttggccgtggtttaggcagagagaaatggtgcaagtg 6671620  T
Q  300 agtttgttgaaacaatgggggttgtccggtacattagtgctgatatgatcccaagtgttatgggtcgtggttgaactaannnnnnnnnnnnnnnnnnnaa 399  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||                   ||    
T  6671619 agtttgttgaaacaatgggggttgtccagtacattagtgctgatatgatcccatgtgttatgggtcgtggttgaactaatttttgttttttatgttttaa 6671520  T
Q  400 ctaatttcagaaataattatgtatttttcccaaagtcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6671519 ctaatttcagaaataattatgtatttttcccaaagtcccttcccattttcctctatttcttccacttgctcatttcatttttcccaagccttcccctcca 6671420  T
Q  500 aactcacaaacaaattaaagccttaatgaatgcccttgaggcattggttaaggtgttaaaccctttgtttaattatgttgatcacttttnnnnnnnntct 599  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  6671419 aactcgcaaacaaattaaagccttaatgaatgcccttgaggcattggttaaggtgttaaaccctttgtttaattatgttgatcacttttaaaaaaattct 6671320  T
Q  600 ttaaaacattagttattcct 619  Q
    ||||||||||||||||||||    
T  6671319 ttaaaacattagttattcct 6671300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 11180277 - 11180353
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||  |||||||    
T  11180277 ccttcccattttcctctatttcttctacttgctcattccttttttcccaagccttcccctccaaactcgtaaacaaa 11180353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 12779478 - 12779417
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||| ||| ||||||||||| | ||||| ||||||||||||||||    
T  12779478 ccttcccattttcctctatttattctacttgctcattcctttttttccaaaccttcccctcc 12779417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 1567240 - 1567182
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || |||||||||||    
T  1567240 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctcc 1567182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 32719496 - 32719555
Alignment:
Q  439 ttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||||||||| || ||| | |||||||| | |||||||||||    
T  32719496 ttcccattttcctctatttcttccacttacttattccttttttccctagccttcccctcc 32719555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 29241966 - 29242028
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||| |||||| || | ||||||| ||||| |||||||||||||| ||||||||    
T  29241966 tctatttcttccatttgctccttccttttttccaaaaccctcccctccaaactcccaaacaaa 29242028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 33590444 - 33590508
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||| |||||||||||||||||| || |||||||||||| | || ||| |||||||||| |||||    
T  33590444 tcccctcccattttcctctatttttttcacttgctcattcctttcttctcaaaccttccactcca 33590508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 1029241 - 1029180
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| | |||||||||||| ||||||||    
T  1029241 tctatttcttccacttgctccttccttttttccaaaaccct-ccctccaaactcccaaacaaa 1029180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 20820647 - 20820724
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| ||||||||| || ||||||||||||||| ||| ||| |||||| |||  |||||||||| ||||| ||||||||    
T  20820647 tcccctcccatttttctttatttcttccacttgttca-ttcttttttcgcaagtcttcccctcccaactcgcaaacaaa 20820724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 28552002 - 28552040
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatt 473  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  28552002 tcccctcccattttcttctatttcttccacttgctcatt 28552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 22788636 - 22788672
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatt 473  Q
    |||||||||||||||| |||||||||||||| |||||    
T  22788636 ccttcccattttcctccatttcttccacttgttcatt 22788672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 36854805 - 36855076
Alignment:
Q  1 gtggagaagtggcatggggagattgggaattgagataaggagaaataagatggggagaacgagaatggtgacaatgtacnnnnnnnnggagtgtgaaatt 100  Q
    |||||||||||||| | ||||||||||||||||||| |||||||| | || | |||||||||||||||  |||||||||        |||| |||| |||    
T  36854805 gtggagaagtggcacgaggagattgggaattgagatgaggagaaagaggacgaggagaacgagaatggccacaatgtacttttttt-ggagcgtgagatt 36854903  T
Q  101 gaattgttggaattgcaagtttgacatcttcgacgtggaatggtttactggtgatggagggaggag-atggagattttgtggagttttggtggatgaggt 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||| || ||||  || ||  ||| |||||||||||||||||||||    
T  36854904 gaattgttggaattgaaagtttgacatcttcgacgtggaatggtttggtggtggtggatggtggagtttgaaggctttatggagttttggtggatgaggt 36855003  T
Q  200 tggtcatcataggacaaggaatccttttgtatcagtttgtaagccaccacggcgagtgaatgatttggttgtggtt 275  Q
    ||||| |||| ||   ||||| || ||| ||||||||||| ||| || || | |||||||||| | ||| ||||||    
T  36855004 tggtcgtcatcgg---aggaacccatttatatcagtttgtgagctacgacagagagtgaatgactcggtcgtggtt 36855076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 38568489 - 38568567
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| ||||||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  38568489 tcccctcccattttcctctatttctttcacttgctcattccttttttcccaagccttcccctccaaactcgcaaacaaa 38568567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 35683595 - 35683653
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  35683595 tcccattttcttctatttcttccacttgctcattccttttttcctaaaccttcccctcc 35683653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 10843004 - 10842931
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||| || ||| | |||||| ||| ||||| ||||||||||| ||||||||    
T  10843004 tcccattttcctctatttcttccacttacttattccttttttctcaagccttctcctccaaactcgcaaacaaa 10842931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 10437950 - 10437887
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||||| |||||| ||||    
T  10437950 tcccctcccatttttctctatttcttccacttgctcattccttttttcccaagccttcctctcc 10437887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 4649120 - 4649182
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||||||   ||||||| ||||| |||||||||||||| ||||||||    
T  4649120 tctatttcttccacttgctcattctttttttccaaaaccctcccctccaaactcccaaacaaa 4649182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 14570157 - 14570221
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||| ||||||||||||||||||| |||||||| ||||| | |||||||||| ||||||| ||||    
T  14570157 tcccctcccattttcctctatttcgtccacttggtcattccttttttcccaagccttcccttcca 14570221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 5772841 - 5772899
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| |||||||||||||||||||||||   ||||||| || |||||||||||    
T  5772841 tcccattttcttctatttcttccacttgctcattctttttttcctaagccttcccctcc 5772899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 38302486 - 38302548
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||| | ||||| |||||||||||||| ||||||||    
T  38302486 tctatttcttccacttgctccttcctttttttcaaaaccctcccctccaaactcccaaacaaa 38302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 2020928 - 2020867
Alignment:
Q  452 ctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||| || | ||||||| ||||| ||||||||||| || ||||||||    
T  2020928 ctatttcttccacttgctccttccttttttccaaaaccctcccctccaaattcccaaacaaa 2020867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 509
Target Start/End: Original strand, 2679992 - 2680057
Alignment:
Q  444 attttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaa 509  Q
    |||||| ||||||||||||||||||| ||| | |||||| |||  |||||||||||||||| ||||    
T  2679992 attttcttctatttcttccacttgcttattccttttttctcaagtcttcccctccaaactcgcaaa 2680057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 18670995 - 18670934
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||| ||||||||||||||||||| ||||| ||||| | ||||||| || |||||||||||    
T  18670995 ccttcgcattttcctctatttcttcgacttgatcattccttttttccgaagccttcccctcc 18670934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 498
Target Start/End: Original strand, 18675839 - 18675892
Alignment:
Q  445 ttttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||| ||||| | |||||||||| ||||| |||||    
T  18675839 ttttcctctatttcttccacttggtcattccttttttcccaagccttcgcctcc 18675892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 15974299 - 15974256
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcc 483  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||    
T  15974299 tcccatttttctctatttcttccacttgctcaattcttttttcc 15974256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 1658125 - 1658063
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||  ||||| |||||||||||||  ||||||||    
T  1658125 tctatttcttccacttgctccttccttttttctaaaaccctcccctccaaacttccaaacaaa 1658063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 41694925 - 41694863
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||| | ||||| ||||||||||||||  |||||||    
T  41694925 tctatttcttccacttgctccttcctttttttcaaaaccctcccctccaaactccgaaacaaa 41694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 10955814 - 10955846
Alignment:
Q  442 ccattttcctctatttcttccacttgctcattt 474  Q
    ||||||| |||||||||||||||||||||||||    
T  10955814 ccatttttctctatttcttccacttgctcattt 10955846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 33909067 - 33909142
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||    
T  33909067 ccttcccattttcctctatttcttccacttgctca-ttccttttttccaaaccttcccctccaaactcgcaaacaaa 33909142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 5939903 - 5939976
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||  |||||||||||||||| ||||||||    
T  5939903 tcccattttcctctatttcttccacttgctcattccttttttcccaagtcttcccctccaaactcgcaaacaaa 5939976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 33944761 - 33944834
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||| ||||||||||||||||| ||||||||    
T  33944761 tcccattttcctctatttcttccacttacttattccttttttcccaagccttcccctccaaactcgcaaacaaa 33944834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 37674262 - 37674335
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||| |||||||||||||||||| || | |||||||||| ||||||||||||||||| ||||||||    
T  37674262 tcccattttcctttatttcttccacttgctcgttccttttttcccaagccttcccctccaaactcgcaaacaaa 37674335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 435 - 499
Target Start/End: Complemental strand, 49183656 - 49183592
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  49183656 tcccctcccatttttctctatttcttccacttgctcattccttttttcccaaaccttcccctcca 49183592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 53664724 - 53664794
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||| ||||||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||||    
T  53664724 cattttcttctatttcttccacttgctcattccttttttcctaagccttcccctccaaactcgcaaacaaa 53664794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 38639548 - 38639475
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||| || |||   |||||||||| ||||||||||||||||| ||||||||    
T  38639548 tcccattttcctctatttcttccacttacttattctttttttcccaagccttcccctccaaactcgcaaacaaa 38639475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 55439535 - 55439470
Alignment:
Q  448 tcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||| ||||||||    
T  55439535 tcctctatttcttccacttgctcattccttttttccaaaaccctcccctccaaactcccaaacaaa 55439470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 44400669 - 44400594
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatt--tcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||| |||||||||||||||||||||  |  |||||||||| ||||||||||||||||| ||||||||    
T  44400669 tcccattttcctttatttcttccacttgctcattccttttttttcccaagccttcccctccaaactcgcaaacaaa 44400594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 11609415 - 11609348
Alignment:
Q  447 ttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaat 514  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||||| ||||||| |||||||||    
T  11609415 ttcctctatttcttccacttgctcattcattttttctcaaatcttccccttcaaactcgcaaacaaat 11609348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 36796371 - 36796309
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||| ||||||||    
T  36796371 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaactcccaaacaaa 36796309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 41962108 - 41962170
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||| ||||||||    
T  41962108 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaactcccaaacaaa 41962170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 50948164 - 50948106
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||||||    
T  50948164 tcccattttcttctatttcttccacatgctcattccttttttcctaaaccttcccctcc 50948106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 3537172 - 3537109
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| ||||||||||||||||||||||||||| |||||| | ||||||  || |||||||||||    
T  3537172 tcccctcccattttcctctatttcttccacttactcattccttttttctaaagccttcccctcc 3537109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 3043251 - 3043313
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||| | |||||||||||||| ||||||||    
T  3043251 tctatttcttccacttgctccttccttttttccaaaatcctcccctccaaactcccaaacaaa 3043313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 25428618 - 25428556
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||| ||  |||| ||||||| ||||| |||||||||||||| ||||||||    
T  25428618 tctatttcttccacttacttctttcttttttccaaaaccctcccctccaaactcccaaacaaa 25428556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 43237239 - 43237177
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||  ||||| |||||||||||||| ||||||||    
T  43237239 tctatttcttccacttgctccttccttttttctaaaaccctcccctccaaactcccaaacaaa 43237177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 497
Target Start/End: Complemental strand, 51684580 - 51684526
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||  |||||||||    
T  51684580 cattttcctctatttcttccacttgttcattccttttttcccaagtcttcccctc 51684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 514
Target Start/End: Original strand, 24242225 - 24242288
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaat 514  Q
    |||||||||||||||||||| || | ||||||  ||| | |||||||||||||| |||||||||    
T  24242225 tctatttcttccacttgctccttccttttttctaaaatcctcccctccaaactcccaaacaaat 24242288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 27197217 - 27197154
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| |||||||||||||||||| |||| ||||||||||   ||||||||| | ||||||||||    
T  27197217 tcccctcccattttcctctattttttccccttgctcattcattttttcccagatcttcccctcc 27197154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 42583404 - 42583451
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||| | ||||||| ||||| ||||||||    
T  42583404 tctatttcttccacttgctcattccttttttccaaaaccctcccctcc 42583451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 43007629 - 43007691
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||  || | ||||||| ||||| |||||||||||||  ||||||||    
T  43007629 tctatttcttccacttgctacttccttttttccaaaaccctcccctccaaacttccaaacaaa 43007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 503
Target Start/End: Original strand, 33982852 - 33982904
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaact 503  Q
    |||||||||||||||||||| || | ||||| | ||||| |||||||||||||    
T  33982852 tctatttcttccacttgctccttcctttttttcaaaaccctcccctccaaact 33982904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 30072525 - 30072593
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaact 503  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  30072525 tcccctcccattttcctctatttcttccacttgctcattccttttttcccaaactttcccctccaaact 30072593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 1364792 - 1364719
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||||    
T  1364792 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctccaaactcgcaaacaaa 1364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 31082780 - 31082717
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||    
T  31082780 tcccctcccattttcctctatttcttccacttgctcattccttttttcccaagcgttcccctcc 31082717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 18590043 - 18589965
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| |||||||||||||||||||||||| ||||||||| |  |||| |||| |||||||| |||||||| ||||||||    
T  18590043 tcccctcccattttcctctatttcttccatttgctcattcctgtttttccaagccttccccgccaaactcgcaaacaaa 18589965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 26905763 - 26905706
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||    
T  26905763 tcccattttcctttatttcttccacttgctcattctttttttcccaaaccttcccctc 26905706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 4003392 - 4003329
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||| || || ||||||||    
T  4003392 tcccctcccattttcctctatttcttccacttgctcattccttttttccaaagccctcccctcc 4003329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 11515003 - 11514945
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || |||||||||||    
T  11515003 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctcc 11514945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 499
Target Start/End: Complemental strand, 21626086 - 21626024
Alignment:
Q  437 ccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||| |||||||||||||||||||| ||||||||||| | ||||| ||||| |||||||||||    
T  21626086 cctttccattttcctctatttcttctacttgctcattcctttttttccaaatcttcccctcca 21626024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 34757564 - 34757506
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||| ||||||||||| ||| |||||||| | ||||||||||||||||||||||    
T  34757564 tcccatttttctctatttctttcacctgctcattccttttttcccaaaccttcccctcc 34757506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 510
Target Start/End: Original strand, 18826365 - 18826424
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaac 510  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||| |||||    
T  18826365 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaactcccaaac 18826424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 5322235 - 5322313
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| ||||| | |||||||| | ||||||| |||| || | ||||||| |||||||||||||||||||| ||||||||    
T  5322235 tcccctcccaatgtcctctatcttttccactagctctttccttttttccaaaaccttcccctccaaactcgcaaacaaa 5322313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 6656077 - 6656019
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | |||||||  | |||||||||||    
T  6656077 tcccattttcttctatttcttccacttgctcattccttttttccttagccttcccctcc 6656019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 13018600 - 13018658
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||| ||||||||||||| |||||| | |||||| ||| |||||||||||    
T  13018600 tcccattttcctccatttcttccacttactcattccttttttctcaagccttcccctcc 13018658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 15555467 - 15555525
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| ||  ||||||||||    
T  15555467 tcccattttcttctatttcttccacttgctcattccttttttcctaagtcttcccctcc 15555525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 38293832 - 38293785
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||| | ||||||| ||||| ||||||||    
T  38293832 tctatttcttccacttgctcattccttttttccaaaaccctcccctcc 38293785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 39204887 - 39204828
Alignment:
Q  454 atttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||| |||| || || | |||||||||| ||||||||||||||||| ||||||||    
T  39204887 atttcttccgcttgttctttccttttttcccaagccttcccctccaaactcgcaaacaaa 39204828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 4041912 - 4041850
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||| |||| ||   ||||||| ||||| |||||||||||||| ||||||||    
T  4041912 tctatttcttccactcgctccttctttttttccaaaaccctcccctccaaactcccaaacaaa 4041850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 8555909 - 8555971
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||  ||||| |||||| ||||||| ||||||||    
T  8555909 tctatttcttccacttgctccttccttttttcaaaaaccctccccttcaaactcccaaacaaa 8555971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 13766071 - 13766133
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||| |||| || ||||||||| | ||| ||||||||||| || ||||||||    
T  13766071 tctatttcttccactcgctccttccatttttccaataccctcccctccaaattcccaaacaaa 13766133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 40211963 - 40211909
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttccc 494  Q
    |||||||||||||||||||||||||||  | ||| | |||||| |||||||||||    
T  40211963 tcccattttcctctatttcttccacttaattattccttttttctcaaaccttccc 40211909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 41100229 - 41100299
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||| ||||||||| |||||| |||||| | ||||||   |  |||||||||||||||||||||||||    
T  41100229 cattttcatctatttctcccacttactcattccttttttcttgagtcttcccctccaaactcacaaacaaa 41100299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 43572670 - 43572728
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||| ||||||||||||||||||||| |  ||| | |||||||||| |||||||||||    
T  43572670 tcccactttcctctatttcttccacttacctattccttttttcccaagccttcccctcc 43572728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 44020302 - 44020238
Alignment:
Q  451 tctatttcttccacttgctcatttcat--ttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||| | |  |||||| ||| | |||||||||||||| ||||||||    
T  44020302 tctatttcttccacttgctcattcctttcttttccaaaatcctcccctccaaactcccaaacaaa 44020238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 439 - 513
Target Start/End: Complemental strand, 2909099 - 2909025
Alignment:
Q  439 ttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||||||||||| || ||| | |||||||||| ||||||||||||||||| ||||||||    
T  2909099 ttcccattttcctctatttcttccacttacttattccttttttcccaagccttcccctccaaactcgcaaacaaa 2909025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 5584464 - 5584391
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||||    
T  5584464 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctccaaactcgcaaacaaa 5584391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 4204898 - 4204971
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||| | |||||||||| | |||||| | |||||||||| ||||||||||||||||||||||||||    
T  4204898 tcccattttcctttgtttcttccacctactcattccttttttcccaagccttcccctccaaactcacaaacaaa 4204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 36886826 - 36886771
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  36886826 cattttcctctatttcttccacttgctcattccttttttcccaagccttcccctcc 36886771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 36269707 - 36269645
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||    
T  36269707 tcccctcccatttttctctatttcttccacttgctcattccttttttcccaagccttcccctc 36269645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 46001526 - 46001454
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||| || ||| | ||||||||||||||||||| ||||||||  |||||||    
T  46001526 tcccattttcctctatttcttccacttacttattccttttttcccaaaccttcccc-ccaaactcgtaaacaaa 46001454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 513
Target Start/End: Complemental strand, 33324595 - 33324521
Alignment:
Q  438 cttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||| ||||  ||||||||||| |||| ||||||||    
T  33324595 cttcccattttcctctatttcttctacttgctca-ttccttttttccaagtcttcccctccatactcgcaaacaaa 33324521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 29092046 - 29091988
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||||| || |||   ||||||||||||||||||||||    
T  29092046 tcccattttcctctatttcttccacttacttattcattttttcccaaaccttcccctcc 29091988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 27255168 - 27255112
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccct 496  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||  ||||||||    
T  27255168 tcccattttcctctatttcttccacttgctcattccttttttctcaagtcttcccct 27255112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 52068262 - 52068321
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||||||||||||||||||||||| || || ||||| |||||| ||| ||||||||||||    
T  52068262 tcccattttcctctatttcttccatttacttatttcttttttctcaagccttcccctcca 52068321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 23871596 - 23871658
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||  ||||||||    
T  23871596 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaacttccaaacaaa 23871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 39887051 - 39887119
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaaca 511  Q
    ||||| ||| |||||||||||||||||||||   ||||||| ||  |||||||||||||||| ||||||    
T  39887051 catttccctttatttcttccacttgctcattctttttttcctaactcttcccctccaaactcgcaaaca 39887119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 7915462 - 7915399
Alignment:
Q  450 ctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||| |||||||||||| || | ||||||  ||||| |||||||||||||| ||||||||    
T  7915462 ctctattttttccacttgctccttccttttttcaaaaaccctcccctccaaactcgcaaacaaa 7915399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 17760597 - 17760656
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatt-tcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||||||||||| ||| |  ||| |||||| |||||||||||    
T  17760597 tcccattttcctctatttcttccacttgcttattcttttttatcccaagccttcccctcc 17760656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 34154453 - 34154508
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||||| || ||| | |||||||||| ||||| |||||    
T  34154453 cattttcctctatttcttccacttacttattccttttttcccaagccttctcctcc 34154508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 37649738 - 37649797
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    ||||||||||||||||||||||||||| || |||   |||||||||| ||||| ||||||    
T  37649738 tcccattttcctctatttcttccacttacttattcattttttcccaagccttctcctcca 37649797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 33991489 - 33991427
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| ||   ||||||| ||||| |||||||| ||||| ||||||||    
T  33991489 tctatttcttccacttgctccttcattttttccaaaaccctcccctcccaactcccaaacaaa 33991427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 42162186 - 42162248
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||| | |||||||||| ||| ||||||||    
T  42162186 tctatttcttccacttgctccttccttttttccaaaatcctcccctccaagctcccaaacaaa 42162248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 32287547 - 32287467
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatt--tcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||| ||||||||||||||| |||| |||| ||| ||  |  ||||| |||||||||||||| ||||||| ||||||||    
T  32287547 tccctttccattttcctctattccttctacttactcgttcattttttttaccaaaccttccccttcaaactcgcaaacaaa 32287467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 38795452 - 38795493
Alignment:
Q  441 cccattttcctctatttcttccacttgctcatttcatttttc 482  Q
    |||||| |||||||||||||||||||||||||| | ||||||    
T  38795452 cccattgtcctctatttcttccacttgctcattccttttttc 38795493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 42488760 - 42488805
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccct 496  Q
    ||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  42488760 tctatttcttccacttgctcattccttttttccaaaaccctcccct 42488805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 29204 - 29131
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| ||||||| |||||||||||| ||||||||    
T  29204 tcccattttcttctatttcttccacttgctcattccttttttcctaaacctttccctccaaactcgcaaacaaa 29131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 435 - 498
Target Start/End: Original strand, 38505451 - 38505514
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  38505451 tcccctcccattttcctctatttcttccacttgctcattccttttttcccaagccttcccctcc 38505514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 2826368 - 2826427
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    |||||||||||||||||||||||||||| ||||| | |||| ||||| ||||||||||||    
T  2826368 tcccattttcctctatttcttccacttgttcattcctttttccccaagccttcccctcca 2826427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 19791640 - 19791593
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  19791640 tctatttcttccacttgctcattccttttttcccaaaccttcccctcc 19791593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 15749071 - 15749129
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || |||||||||||    
T  15749071 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctcc 15749129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 43741671 - 43741609
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    |||| ||||||||||||||||||||| |||||||||||| | |||||| ||| ||||||||||    
T  43741671 tcccctcccattttcctctatttctttcacttgctcattccttttttctcaagccttcccctc 43741609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 32650502 - 32650559
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||| ||| ||||    
T  32650502 tcccattttcctctatttcttccacttgctcattctttttttcccaaactttctcctc 32650559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 30080936 - 30080873
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||| ||||||||||||||||||||||||||||||| || | |||||| |||  ||||||||||    
T  30080936 tcccctcccattttcctctatttcttccacttgctccttccttttttctcaagtcttcccctcc 30080873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 23620926 - 23620988
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||| ||||||||| ||||||||    
T  23620926 tctatttcttccacttgctccttccttttttccaaaaccctcccttccaaactcccaaacaaa 23620988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 4058263 - 4058319
Alignment:
Q  442 ccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||| || ||||  ||||||||||  ||||||||||    
T  4058263 ccattttcctctatttcttccacttacttattttttttttcccaagtcttcccctcc 4058319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 45940522 - 45940566
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttccc 484  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||    
T  45940522 tcccattttcttctatttcttccacttgttcatttcttttttccc 45940566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 4125906 - 4125851
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||   ||||||| |||| |||||||||    
T  4125906 cattttcctcaatttcttccacttgctcattctttttttcctaaacattcccctcc 4125851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 38137905 - 38137826
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaa-ccttcccctccaaactcacaaacaaa 513  Q
    |||| ||||| | ||||| ||||||||||| ||||| || | ||||| ||||| ||||||||||||||||| ||||||||    
T  38137905 tcccctcccaatgtcctccatttcttccacgtgctccttcctttttttccaaagccttcccctccaaactcgcaaacaaa 38137826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Original strand, 42113089 - 42113148
Alignment:
Q  450 ctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaa 509  Q
    ||||||||||||||||||||| || | ||||||| ||||| ||||||| |||||| ||||    
T  42113089 ctctatttcttccacttgctccttccttttttccaaaaccctcccctctaaactcgcaaa 42113148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 43348345 - 43348404
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttccc 494  Q
    |||| ||||||||||||||||||||| |||||| |||||   ||||||||||| ||||||    
T  43348345 tcccctcccattttcctctatttctttcacttgatcattctttttttcccaaatcttccc 43348404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 16805689 - 16805747
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||| |||||||||||| || ||| | ||||||||||  ||||||||||    
T  16805689 tcccattttcctctctttcttccacttacttattccttttttcccaagtcttcccctcc 16805747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 18788848 - 18788786
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| |||| ||||| | ||| | |||| ||||||||| ||||||||    
T  18788848 tctatttcttccacttgctcctttctttttttcaaaatcctcccttccaaactctcaaacaaa 18788786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 23325734 - 23325796
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||| ||| || | ||||||| ||||| |||||||||| ||| ||||||||    
T  23325734 tctatttcttccacttactccttccttttttccaaaaccgtcccctccaatctcccaaacaaa 23325796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 17884314 - 17884386
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||  |||| |||||| |||||||||||||| ||||| | ||||  |||||||||||||| ||||||||    
T  17884314 tcccatttaactctctttcttacacttgctcatttc-ttttttcaaaactctcccctccaaactcgcaaacaaa 17884386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 34670152 - 34670099
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccct 496  Q
    ||||||||||||||||||| |||||||| || | |||||||||| | |||||||    
T  34670152 cattttcctctatttcttctacttgctcgttccttttttcccaagcattcccct 34670099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 46449121 - 46449072
Alignment:
Q  453 tatttcttccacttgctcatttcatttttcccaaaccttcccctccaaac 502  Q
    ||||||||||||||||||||| | ||||||| ||||| | ||||||||||    
T  46449121 tatttcttccacttgctcattccttttttccaaaaccctgccctccaaac 46449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 42253916 - 42253868
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaacctt 491  Q
    |||||||||||||||||||||||| || ||| | |||||||||| ||||    
T  42253916 cattttcctctatttcttccacttacttattccttttttcccaagcctt 42253868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 93635 - 93701
Alignment:
Q  447 ttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||| |||||||||||||| || ||| | |||||||||||||||||||||||||||| ||||||||    
T  93635 ttcctttatttcttccacttacttattccttttttcccaaaccttcccctccaaactcgcaaacaaa 93701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 33500479 - 33500421
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||    
T  33500479 tcccattttcctctatttcttccacttgctcattccttttttctcaagccttcccctcc 33500421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 45971518 - 45971448
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  |||||||| ||||||  ||||||||    
T  45971518 cattttcctctatttcttccacttgctcattccttttttcccaagacttccccttcaaacttgcaaacaaa 45971448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 51153653 - 51153731
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| |||||||||| |||||||||| ||||| |||||| | ||||||||||| |||||||| ||||||| ||||||||    
T  51153653 tcccctcccattttcttctatttcttgcacttactcattccttttttcccaaatcttccccttcaaactcgcaaacaaa 51153731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 49668225 - 49668282
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    ||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||    
T  49668225 tcccatttttctctatttcttccacttgctcattccttttttctcaaaccttcccctc 49668282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 16318576 - 16318518
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || |||||||||||    
T  16318576 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccctcc 16318518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 28175586 - 28175644
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||| |||||||||||    
T  28175586 tcccattttcctctatttcttccacttacttattccttttttcccaagccttcccctcc 28175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 41709242 - 41709296
Alignment:
Q  443 cattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    |||||||||||||||||||||||||||| || | |||||||||| ||||||||||    
T  41709242 cattttcctctatttcttccacttgctcgttccttttttcccaagccttcccctc 41709296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 45823514 - 45823456
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||||||||||||| | | |||||||||| | |||||||||    
T  45823514 tcccattttcctctatttcttccacttgctcactccttttttcccaagcattcccctcc 45823456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 48830948 - 48831010
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||| ||||||||    
T  48830948 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaactcccaaacaaa 48831010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 12708956 - 12709016
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaa 500  Q
    ||||||||||||||||||||||||||| || |||   |||||||||| |||||||||||||    
T  12708956 tcccattttcctctatttcttccacttacttattctttttttcccaagccttcccctccaa 12709016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 38136958 - 38137014
Alignment:
Q  442 ccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||| || ||| | |||||| ||| |||||||||||    
T  38136958 ccattttcctctatttcttccacttacttattccttttttctcaagccttcccctcc 38137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 16535639 - 16535592
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||| || | ||||||||||||| ||||||||    
T  16535639 tctatttcttccacttgctccttccttttttcccaaaccctcccctcc 16535592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 29114355 - 29114414
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttc-atttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||||| || ||| |  |||||||||| |||||||||||    
T  29114355 tcccattttcctctatttcttccacttacttattcctttttttcccaagccttcccctcc 29114414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 37756846 - 37756908
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||| | |||| ||||||||| ||||||||    
T  37756846 tctatttcttccacttgctccttccttttttccaaaatcctcccatccaaactctcaaacaaa 37756908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 34336006 - 34335927
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttc-atttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||| |||||||||||| ||||||||||||||||||||| |  |||||| ||| ||||||||||||||||| ||| ||||    
T  34336006 tcccctcccattttcctttatttcttccacttgctcattcctttttttctcaagccttcccctccaaactcgcaagcaaa 34335927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 498
Target Start/End: Original strand, 79730 - 79794
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatttc-atttttcccaaaccttcccctcc 498  Q
    |||| ||||||||||||||||||||||||||||||| || |  |||||||||| |||||||||||    
T  79730 tcccctcccattttcctctatttcttccacttgctcgttcctttttttcccaagccttcccctcc 79794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 513
Target Start/End: Complemental strand, 29611938 - 29611878
Alignment:
Q  453 tatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||||||||||||||||||||| |||| |  ||||| |||||||||||||| ||||||||    
T  29611938 tatttcttccacttgctcatttctttttccaaaaaccctcccctccaaactcccaaacaaa 29611878  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 8228493 - 8228434
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcca 499  Q
    ||||||||| |||||||||||||||||||||||| | |||||| ||| | ||||||||||    
T  8228493 tcccatttttctctatttcttccacttgctcattccttttttctcaagcattcccctcca 8228434  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 14581873 - 14581927
Alignment:
Q  444 attttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||  ||||||||| | |||||||||| |||||||||||    
T  14581873 attttcctctatttcttccggttgctcattccttttttcccaagccttcccctcc 14581927  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 21173979 - 21174037
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || | |||||||||    
T  21173979 tcccattttcttctatttcttccacttgctcattccttttttcctaagcattcccctcc 21174037  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 26772763 - 26772821
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| || |||||| ||||    
T  26772763 tcccattttcttctatttcttccacttgctcattccttttttcctaagccttcctctcc 26772821  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 1840335 - 1840400
Alignment:
Q  448 tcctctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    ||||| ||||||||||||||||| || | ||||||| || || |||||||||||||| ||||||||    
T  1840335 tcctcaatttcttccacttgctccttccttttttccaaacccctcccctccaaactcgcaaacaaa 1840400  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 6943557 - 6943613
Alignment:
Q  442 ccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||||||||||||||| |||||||||   ||||||||||| ||||| ||||    
T  6943557 ccattttcctctatttcttccaattgctcattctttttttcccaaatcttcctctcc 6943613  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 491
Target Start/End: Complemental strand, 43007636 - 43007589
Alignment:
Q  444 attttcctctatttcttccacttgctcatttcatttttcccaaacctt 491  Q
    ||||||||||||||||||||||||||||||  ||||||| || |||||    
T  43007636 attttcctctatttcttccacttgctcattcaatttttctcagacctt 43007589  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 31297480 - 31297542
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| ||   ||||||| ||||| ||| |||||||||| ||||||||    
T  31297480 tctatttcttccacttgctccttcattttttccaaaaccctcctctccaaactcccaaacaaa 31297542  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 41866233 - 41866271
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatt 473  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  41866233 tcccctcccattttcctttatttcttccacttgctcatt 41866271  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 13865224 - 13865285
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaa 512  Q
    |||||||||||||||||||| ||   ||||||| ||| | |||||||||||||| |||||||    
T  13865224 tctatttcttccacttgctccttcattttttccaaaatcctcccctccaaactcccaaacaa 13865285  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 36837599 - 36837652
Alignment:
Q  444 attttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctc 497  Q
    |||||||||||||||||||||||  | ||| | |||||| ||||||||||||||    
T  36837599 attttcctctatttcttccacttatttattccttttttctcaaaccttcccctc 36837652  T

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Target: scaffold0952 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 3805 - 3867
Alignment:
Q  451 tctatttcttccacttgctcatttcatttttcccaaaccttcccctccaaactcacaaacaaa 513  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||| ||||||||    
T  3805 tctatttcttccacttgctccttccttttttccaaaaccctcccctccaaactctcaaacaaa 3867  T

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Target: scaffold0128 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 26338 - 26280
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||| |||||||||||    
T  26338 tcccattttcctctatttcttccacttacttattccttttttcccaagccttcccctcc 26280  T

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Target: scaffold0136 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 2144 - 2202
Alignment:
Q  440 tcccattttcctctatttcttccacttgctcatttcatttttcccaaaccttcccctcc 498  Q
    |||||||||| ||||||||||||||||||||||| | ||||||  || |||||||||||    
T  2144 tcccattttcttctatttcttccacttgctcattccttttttcttaagccttcccctcc 2202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 45034 - 45073
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcattt 474  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  45034 tcccctcccattttcctctatttcttctacttgctcattt 45073  T

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Target: scaffold0388 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 7034 - 6996
Alignment:
Q  435 tcccttcccattttcctctatttcttccacttgctcatt 473  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  7034 tcccctcccattttcctctatttcttctacttgctcatt 6996  T

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Target: scaffold0248 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Original strand, 317 - 346
Alignment:
Q  440 tcccattttcctctatttcttccacttgct 469  Q
    ||||||||||||||||||||||||||||||    
T  317 tcccattttcctctatttcttccacttgct 346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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