View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_31 (Length: 238)
Name: NF11971_low_31
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34033138 - 34033370
Alignment:
| Q |
1 |
gccttttggtagttccatgatagtgacatactctaacttgtcaaacttcagtgcaaatgttattcgcgacatcaagttttagggttagtttttactgagg |
100 |
Q |
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| T |
34033138 |
gccttttggtagtgccatgatagcgacatactctaacttgtcaaacttcagtgcaaatgttattcgcgacatcaagttttagggttagtttttactgagg |
34033237 |
T |
|
| Q |
101 |
cccaacaagctaggttgcttctaagagaatcatggaataacatgactcaaaatgaagagcaatttcaattggtggtcctaagaaaatcgaagaacaagtt |
200 |
Q |
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|||||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033238 |
cccaacaagctagggtgtttctaagcaaatcatgggataacatgactcaaaatgaagagcaatttcaattggtggtcctaagaaaatcgaagaacaagtt |
34033337 |
T |
|
| Q |
201 |
aaaataacagcagagttaaaataacagcaattc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34033338 |
aaaataacagcagagttaaaataacagcaattc |
34033370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 10382158 - 10382093
Alignment:
| Q |
119 |
ttctaagagaatcatggaataacatgactcaaaatgaagagcaatttcaattggtggtcctaagaa |
184 |
Q |
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| T |
10382158 |
ttctaagtgaatcatgggttaacatgactcaaaacgaagagcaattacaattggtggtcccaagaa |
10382093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 523832 - 523754
Alignment:
| Q |
5 |
tttggtagttccatgatagtgacatactctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttag |
82 |
Q |
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| T |
523832 |
tttggtagttctattatggtggcagactctaacttgtcaaactttagtgcaaattttatttgcgatatgcaagttttag |
523754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 37087292 - 37087247
Alignment:
| Q |
20 |
atagtgacatactctaacttgtcaaacttcagtgcaaatgttattc |
65 |
Q |
| |
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|||| |||| |||||||||||||||| || |||||||||||||||| |
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| T |
37087292 |
atagggacaaactctaacttgtcaaattttagtgcaaatgttattc |
37087247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 10580338 - 10580382
Alignment:
| Q |
21 |
tagtgacatactctaacttgtcaaacttcagtgcaaatgttattc |
65 |
Q |
| |
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|||||| | |||||||||||||||||||| || |||||||||||| |
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| T |
10580338 |
tagtgagagactctaacttgtcaaacttctgttcaaatgttattc |
10580382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 39358586 - 39358665
Alignment:
| Q |
30 |
actctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttagggttagtttttactgaggcccaacaa |
108 |
Q |
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|
|||||||||||||||| |||| |||||||||||||| ||| || |||||||||||||||||| | ||||||| |||||| |
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| T |
39358586 |
actctaacttgtcaaatttcaatgcaaatgttattcacgatatgcaagttttagggttagttccttctgaggcgcaacaa |
39358665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 24308122 - 24308181
Alignment:
| Q |
32 |
tctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttagggttagtt |
90 |
Q |
| |
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||||||||||||||||| |||||||||||||| | |||| | |||||||||||||||||| |
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| T |
24308122 |
tctaacttgtcaaactttagtgcaaatgttatacacgacttgcaagttttagggttagtt |
24308181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 18739565 - 18739650
Alignment:
| Q |
28 |
atactctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttagggttagtttttactgaggcccaacaagcta |
112 |
Q |
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||||||||||||||||||||| | |||||||| ||||| | |||| ||||||||| |||||| ||||||||||||||| |||| |
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| T |
18739565 |
atactctaacttgtcaaactttaatgcaaatggtattcacaacatgcaagttttataactagtttctactgaggcccaacatgcta |
18739650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 34711925 - 34711883
Alignment:
| Q |
23 |
gtgacatactctaacttgtcaaacttcagtgcaaatgttattc |
65 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
34711925 |
gtgacatactctaacgtgtcaaactttagtgcaaaagttattc |
34711883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 19566186 - 19566126
Alignment:
| Q |
25 |
gacatactctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttaggg |
84 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||||||||| ||||| |||||||||||| |
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| T |
19566186 |
gacagactctaacttgtcacactttagtgaaaatgttattcatgacatgcaagttttaggg |
19566126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 6827326 - 6827410
Alignment:
| Q |
25 |
gacatactctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttagggttagtttttactgaggcccaacaa |
108 |
Q |
| |
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|||| ||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||| | ||| ||||| |||||||||| |
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| T |
6827326 |
gacagactctaacttgtcaaactttagtgaaaatgttattcatgacatgcaagttttaggacttgttcctactgtggcccaacaa |
6827410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 39279661 - 39279589
Alignment:
| Q |
30 |
actctaacttgtcaaacttcagtgcaaatgttattcgcgacat-caagttttagggttagtttttactgaggc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||||| |||||||||| | ||||| ||| |||||| |
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| T |
39279661 |
actctaacttgtcaaactttagtgcaaatattattcatgacatgcaagttttagagctagttcttattgaggc |
39279589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 19599221 - 19599181
Alignment:
| Q |
25 |
gacatactctaacttgtcaaacttcagtgcaaatgttattc |
65 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
19599221 |
gacatactctaacttgtcacactttagtgaaaatgttattc |
19599181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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