View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11971_low_33 (Length: 229)

Name: NF11971_low_33
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11971_low_33
NF11971_low_33
[»] chr2 (4 HSPs)
chr2 (1-215)||(5461069-5461272)
chr2 (110-161)||(32102857-32102909)
chr2 (124-171)||(35198243-35198290)
chr2 (124-164)||(42868048-42868088)
[»] chr4 (6 HSPs)
chr4 (114-164)||(36768850-36768901)
chr4 (124-171)||(12710003-12710050)
chr4 (121-166)||(39598803-39598848)
chr4 (124-160)||(5778452-5778488)
chr4 (127-163)||(9906782-9906818)
chr4 (127-163)||(32369927-32369963)
[»] chr3 (2 HSPs)
chr3 (124-166)||(49636838-49636880)
chr3 (126-165)||(36301999-36302038)
[»] chr8 (7 HSPs)
chr8 (124-165)||(29096952-29096993)
chr8 (126-174)||(25799145-25799193)
chr8 (113-165)||(31551836-31551888)
chr8 (124-165)||(1979418-1979459)
chr8 (127-164)||(2506189-2506226)
chr8 (130-163)||(10170404-10170437)
chr8 (123-163)||(6252504-6252544)
[»] chr6 (3 HSPs)
chr6 (127-162)||(7564179-7564214)
chr6 (124-163)||(34625742-34625781)
chr6 (124-174)||(18803244-18803294)
[»] chr5 (3 HSPs)
chr5 (124-163)||(40878402-40878441)
chr5 (124-161)||(28322251-28322288)
chr5 (124-164)||(9895154-9895194)
[»] chr7 (3 HSPs)
chr7 (114-166)||(38957343-38957397)
chr7 (124-165)||(28266480-28266521)
chr7 (115-160)||(31753765-31753810)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 5461069 - 5461272
Alignment:
Q  1 tttatatttttcaaactgtccatttcaaacataacctgtaatcactgatgttcacaagctttgtagcatggacacctttgatcgaaggtatgtccagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5461069 tttatatttttcaaactgtccatttcaaacataacctgtaatcactgatgttcacgagctttgtagcatggacacctttgatcgaaggtatgtccagtgt 5461168  T
Q  101 ctaacatttacatgacactgacaatgtgattacattcaattaatttattatctcaaattattaccaatatcaaccaacgtgttagtgttgatatgtcatg 200  Q
    |           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5461169 c-----------tgacattgacaatgtgattacattcaattaatttattatctcaaattattaccaatatcaaccaacgtgttagtgttgatatatcatg 5461257  T
Q  201 ttcggtatccacgtc 215  Q
    | |||||||||||||    
T  5461258 tccggtatccacgtc 5461272  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 32102857 - 32102909
Alignment:
Q  110 acatgacactgacaa-tgtgattacattcaattaatttattatctcaaattat 161  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  32102857 acatgacactgacaaatgtgattatattcaattaatttattttctcaaattat 32102909  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 35198243 - 35198290
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattaccaatatc 171  Q
    |||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  35198243 atgtgattacattcaattaattcattttcttaaattatgaccaatatc 35198290  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 42868048 - 42868088
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattac 164  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  42868048 atgtgattacattcagttaatttaatttctcaaattattac 42868088  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 36768850 - 36768901
Alignment:
Q  114 gacactgaca-atgtgattacattcaattaatttattatctcaaattattac 164  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  36768850 gacactgacacatgtgattacattcaattaattaattctctcaaattattac 36768901  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 12710050 - 12710003
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattaccaatatc 171  Q
    ||||| |||| ||||||||||||||| ||||||||||||||| |||||    
T  12710050 atgtgtttacgttcaattaatttattttctcaaattattaccgatatc 12710003  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 39598803 - 39598848
Alignment:
Q  121 acaatgtgattacattcaattaatttattatctcaaattattacca 166  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||    
T  39598803 acaatgtgattacattcaattaattcattttcgcaaatcattacca 39598848  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 5778452 - 5778488
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaatta 160  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  5778452 atgtgattacattcaattgatttattgtctcaaatta 5778488  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 9906818 - 9906782
Alignment:
Q  127 tgattacattcaattaatttattatctcaaattatta 163  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  9906818 tgattacattcaattaatttattttctctaattatta 9906782  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 32369927 - 32369963
Alignment:
Q  127 tgattacattcaattaatttattatctcaaattatta 163  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatta 32369963  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 49636838 - 49636880
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattacca 166  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattattacca 49636880  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 36302038 - 36301999
Alignment:
Q  126 gtgattacattcaattaatttattatctcaaattattacc 165  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  36302038 gtgattacattcaattaatttattttctcacattattacc 36301999  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 29096993 - 29096952
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattacc 165  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  29096993 atgtgattacattcaattaatttattttcttaaattattacc 29096952  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 25799193 - 25799145
Alignment:
Q  126 gtgattacattcaattaatttattatctcaaattattaccaatatcaac 174  Q
    ||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattattaccaatgtcaac 25799145  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 31551836 - 31551888
Alignment:
Q  113 tgacactgacaatgtgattacattcaattaatttattatctcaaattattacc 165  Q
    |||||| ||||||||||||| |||||||| ||| ||| |||||||||||||||    
T  31551836 tgacaccgacaatgtgattatattcaatttattcattttctcaaattattacc 31551888  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 1979459 - 1979418
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattacc 165  Q
    ||||||||||||| |||||||| ||| |||||||||||||||    
T  1979459 atgtgattacatttaattaattaattttctcaaattattacc 1979418  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 2506226 - 2506189
Alignment:
Q  127 tgattacattcaattaatttattatctcaaattattac 164  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  2506226 tgattacattcaattaatttattttctctaattattac 2506189  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 10170404 - 10170437
Alignment:
Q  130 ttacattcaattaatttattatctcaaattatta 163  Q
    |||||||||||||||||||| |||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattatta 10170437  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 6252504 - 6252544
Alignment:
Q  123 aatgtgattacattcaattaatttattatctcaaattatta 163  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  6252504 aatgtgattacatttaattaaattattttctcaaattatta 6252544  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 7564179 - 7564214
Alignment:
Q  127 tgattacattcaattaatttattatctcaaattatt 162  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7564179 tgattacattcaattaatttattttctcaaattatt 7564214  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 34625781 - 34625742
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattatta 163  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  34625781 atgtgattacattcaattaattcattttctcaaattatta 34625742  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 18803294 - 18803244
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattaccaatatcaac 174  Q
    |||||||||||||||||||  | ||| |||||||| |||||||||||||||    
T  18803294 atgtgattacattcaattatgtaattttctcaaataattaccaatatcaac 18803244  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 40878402 - 40878441
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattatta 163  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  40878402 atgtgattacattcaattaatttagtttctcaaattatta 40878441  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 28322288 - 28322251
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattat 161  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  28322288 atgtgattacattcaattaattcattttctcaaattat 28322251  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 9895194 - 9895154
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattac 164  Q
    |||||||||| ||||| ||||||||| ||||||||||||||    
T  9895194 atgtgattacgttcaaataatttattttctcaaattattac 9895154  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 38957343 - 38957397
Alignment:
Q  114 gacactgaca-atgtgattacattcaattaattta-ttatctcaaattattacca 166  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||| ||||    
T  38957343 gacactgacacatgtgattacattcaattaatttatttttctcaaattatcacca 38957397  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 28266521 - 28266480
Alignment:
Q  124 atgtgattacattcaattaatttattatctcaaattattacc 165  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  28266521 atgtgtttacatccaattaatttattttctcaaattattacc 28266480  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 31753765 - 31753810
Alignment:
Q  115 acactgacaatgtgattacattcaattaatttattatctcaaatta 160  Q
    |||| ||||||||||||||||||||||| || ||| ||||||||||    
T  31753765 acacggacaatgtgattacattcaattatttaattttctcaaatta 31753810  T

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