View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_4 (Length: 603)
Name: NF11971_low_4
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 208 - 588
Target Start/End: Original strand, 2552058 - 2552439
Alignment:
| Q |
208 |
ccttcacttttgatatgtcacaagtgtggtgagaaactaaaaaaccttaatgatgttgaaactcaccatatcactgaacattattcaggtaatgataaat |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2552058 |
ccttcaattttgatatgtcacaagtgtggtgagaaactgaaaaaccttaatgatgttgaaactcaccatatcactgaacattattcaggtaatgataaat |
2552157 |
T |
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| Q |
308 |
tgcttcctagttaaatttacctgttttgtttatggtgcttctcaatttaagtcttgttcttgatctgtccttaatttctttatgttatgctttggttgtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2552158 |
tgcttcctagttaaatttacctgttttgtttatggtgcttctcaatttaagtcttgttcttgatctgtccttaatttctttatgttatgctttggttgtt |
2552257 |
T |
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| Q |
408 |
gcatttaacatgtgttgatttctagagctctgattaaacagttttcatcctctatagttgca-ttggattctgcttatgattttcatgtcatgaacaatg |
506 |
Q |
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| T |
2552258 |
gcatttaacatgtgttgatttctagagctctgattaaacagttttcatcctctatagttgcatttggattctgcttatgattttcatgtcatgaacaatg |
2552357 |
T |
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| Q |
507 |
cttcaaaattttcaaacagtatcacaagtgtttatgccaacatataaactccaataagattcatctaggcatactattttgt |
588 |
Q |
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| T |
2552358 |
cttcaaaattttcaaacagtatcacaagtgtttatgccaacatataaactccaataagattcatctaggcatactattttgt |
2552439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2552050 - 2551838
Alignment:
| Q |
1 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattatattcaacaggattggttaaccatgaagatgtagatgcgcttctag |
100 |
Q |
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| T |
2552050 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattataatcaacaggattggttaaccatgaagatgtagatgcgcttctag |
2551951 |
T |
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| Q |
101 |
ttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcatgaagaatttcatggattataggatcacttatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551950 |
ttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcatgaagaatttcatggattataggatcacttatttc |
2551851 |
T |
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| Q |
201 |
aatgctcccttca |
213 |
Q |
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| T |
2551850 |
aatgctcccttca |
2551838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2562843 - 2562760
Alignment:
| Q |
1 |
tcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattata---ttcaacaggattggttaaccatgaa |
81 |
Q |
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| T |
2562843 |
tcagaatccatctcaaccaacaaccttgttctagatgagacattttcctcatcataatcatcaacatgattggttaaccttgaa |
2562760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 2562854 - 2562935
Alignment:
| Q |
208 |
ccttcacttttgatatgtcacaagtgtggtgagaaactaaaaaaccttaatgatgttgaaactcaccatatcactgaacatt |
289 |
Q |
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|||||| | ||||||||| |||| || |||||||||||||||||||||| || ||||||| | |||||||||||||| |||| |
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| T |
2562854 |
ccttcaatattgatatgttacaaatgcggtgagaaactaaaaaaccttactgctgttgaagcacaccatatcactgagcatt |
2562935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 38036035 - 38035990
Alignment:
| Q |
519 |
caaacagtatcacaagtgtttatgccaacatataaactccaataag |
564 |
Q |
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| T |
38036035 |
caaacagtttcacaagtgtttatgccaacaaataacctcaaataag |
38035990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 3176079 - 3176035
Alignment:
| Q |
520 |
aaacagtatcacaagtgtttatgccaacatataaactccaataag |
564 |
Q |
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||||||| |||||||||||| ||||||||||||| ||| |||||| |
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| T |
3176079 |
aaacagtttcacaagtgtttgtgccaacatataagctcgaataag |
3176035 |
T |
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