View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11971_low_5 (Length: 502)
Name: NF11971_low_5
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 26057727 - 26057482
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
26057727 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
26057628 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacatnnnnnnnntgattgaaacggcgttttgcct |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
26057627 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataagaaaaataattgaaacggtgttttgcct |
26057528 |
T |
|
| Q |
201 |
tcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcact |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26057527 |
tcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcact |
26057482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27802636 - 27802882
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
27802636 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
27802735 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacatnnnnnnnnt--gattgaaacggcgttttgc |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
27802736 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataaaaaaaataaaattgaaacggtgttttgc |
27802835 |
T |
|
| Q |
199 |
cttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcac |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27802836 |
cttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcac |
27802882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 43436917 - 43437161
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
43436917 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
43437016 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacatnnnnnnnntgattgaaacggcgttttgcct |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
43437017 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataagaaaaataattgaaacggtgttttgcct |
43437116 |
T |
|
| Q |
201 |
tcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437117 |
tcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcac |
43437161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 32186006 - 32185758
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
32186006 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
32185907 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacat-nnnnnnnntgattgaaacggcgttttgcc |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
32185906 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataaaaaaaaataattgaaacggtgttttgcc |
32185807 |
T |
|
| Q |
200 |
ttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcactaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32185806 |
ttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcactaa |
32185758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41714722 - 41714476
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
41714722 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
41714623 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacat-nnnnnnnntgattgaaacggcgttttgcc |
199 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
41714622 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataaaaaaaaataattgaaacggtgttttgcc |
41714523 |
T |
|
| Q |
200 |
ttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcact |
246 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41714522 |
ttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcact |
41714476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 48549247 - 48548996
Alignment:
| Q |
1 |
gaagcaattgtgttgtttgtgtgaatatgggcagtttggtaaatcatctttttaaagtgaaacatgattgttggattgccgtgtaagcttcaatttgtgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
48549247 |
gaagcagttgtgttgtttgtgtgaatatgggtagtttggtaaatcatccttttaaagtgaaacgtgattgttgaattgccgtggaagcttcaatttgtgg |
48549148 |
T |
|
| Q |
101 |
cttctgagaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacat----nnnnnnnntgattgaaacggcgtttt |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
48549147 |
cttctgaaaaacccacgtttgggaccaaaatcactttcttgggatttgattttgcaaaacatccaaacataaaaaaaaaaaaaaattgaaacggtgtttt |
48549048 |
T |
|
| Q |
197 |
gccttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcactaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48549047 |
gccttcaaaacgtggtttggggcgtgaaaacgcttgaccaaacaagcactaa |
48548996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 307 - 484
Target Start/End: Original strand, 43719609 - 43719786
Alignment:
| Q |
307 |
cacaattcaaatgtcatttattgtgtttccattactttttgaaaagagtctgaaggtaatttatgtataaatgtattttgaattgtataatctaaagcgt |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
43719609 |
cacaattcaaatctcatttattgtgtttccattactttttgaaaagagtctgaaggtaatttatgtataaatgtattttgaattgtataatctaaaacgt |
43719708 |
T |
|
| Q |
407 |
atttttcaacttcgaattatacaaactaaacgttttagagaaagagggtctatcgacgcttatggtcacggataatac |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
43719709 |
atttttcaacttcgaattatacaaactaaacgttttagagaaagagggtctatcgacgtttatggtcacggataatac |
43719786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 43719550 - 43719584
Alignment:
| Q |
248 |
acttaaccttttttctaagcaataatggttatcac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
43719550 |
acttaaccttttttctaagcaataatggttatcac |
43719584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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