View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11971_low_6 (Length: 476)
Name: NF11971_low_6
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 52409109 - 52409560
Alignment:
| Q |
12 |
atcatatagtacatcactttcacaacacaatgattaatttgtttgttcctaattgattttgcagcaattaactccggataatctccctcctgaaatcaaa |
111 |
Q |
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| T |
52409109 |
atcatatagtacatcactttcacaacacaatgattaatttgtttgttcctaattgattttgcagcaattaactccggataatctccctcctgaaatcaaa |
52409208 |
T |
|
| Q |
112 |
ccttttatcagtgaagatgttggaaatattgcaaaacttgctactgttcttttaattcacaagaatttgggccaggtatttgtattgtatcacacttttc |
211 |
Q |
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| T |
52409209 |
ccttttatcagtgaagatgttggaaatattgcaaaacttgctactgttcttttaattcacaagaatttgggccaggtatttgtattgtatcacacttttc |
52409308 |
T |
|
| Q |
212 |
atctacatttttacgagttttcgagctcttgcgaatttcacaaaacaacataccattgtatgacaggactctgaatggcatccttatatcagctgtcttc |
311 |
Q |
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| T |
52409309 |
atctacatttttacgagttttcgagctcttgcgaatttcacaaaacaacataccattgtatgacaggactctgaatggcatccttatatcagctgtcttc |
52409408 |
T |
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| Q |
312 |
ccccgcaagccgaaatgcataatacggcaagttttttactttatttatgttgacaaatgtatggtgtaaggcattactataagctattttaataccagct |
411 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409409 |
ccccgcaagccgaaatgcataatacggcaagttttctactttatttatgttgacaaatgtatggtgtaaggcattactataagctattttaataccagct |
52409508 |
T |
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| Q |
412 |
tatttgtttaaatgtcaattttatgttttcaaattatttatttatgtctgtg |
463 |
Q |
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| T |
52409509 |
tatttgtttaaatgtcaattttatgttttcaaattatttatttatgtctgtg |
52409560 |
T |
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