View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11971_low_7 (Length: 457)
Name: NF11971_low_7
Description: NF11971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11971_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 17953364 - 17953797
Alignment:
| Q |
19 |
actccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaatagatacta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17953364 |
actccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaacagatacta |
17953463 |
T |
|
| Q |
119 |
agcaattagattctcactttattcacaaaagcatgtctaattattttggcaaagtgtgtgttttttaagtaagagtcataagatgtagtgtttaattccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17953464 |
agcaattagattctcactttattcacaaaagcatgtctaattattttggcaaagtgtgtgttttttaagtaagagtcataagatgtagtgtttaattccg |
17953563 |
T |
|
| Q |
219 |
tttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaataaacgtgaacatcatttggattaaaataaaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17953564 |
tttatttagtttttcgtagcttaatgtgatgattattggactcctctcatgacccaacacattgcaataaacgtgaacatcatttcgattaaaataaaca |
17953663 |
T |
|
| Q |
319 |
aaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17953664 |
aaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaa |
17953763 |
T |
|
| Q |
419 |
aacaatgaggataataatgtcaatctgaaatgac |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17953764 |
aacaatgaggataataatgtcaatctgaaatgac |
17953797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 17721903 - 17721804
Alignment:
| Q |
39 |
ttatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaatagatactaagcaattagattctcacttt |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
17721903 |
ttatgaaatgattgtgaaatctatggattatagttggtctcctaagctgaaattatcttggaaaacataaa-agatactaagcaattagattctcacttt |
17721805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 19023132 - 19023033
Alignment:
| Q |
39 |
ttatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaatagatactaagcaattagattctcacttt |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
19023132 |
ttatgaaatgattgtgaaatctatggattatagttggtctcctaagctgaaattatcttggaaaacataaa-agatactaagcaattagattctcacttt |
19023034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 17721807 - 17721730
Alignment:
| Q |
209 |
tttaattccgtttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaat |
286 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
17721807 |
tttagttccgcttatttagtttttcgtagcttaatatgatgatcattaggctcctctcatgacccaacacatttcaat |
17721730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 19023036 - 19022959
Alignment:
| Q |
209 |
tttaattccgtttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaat |
286 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
19023036 |
tttagttccgcttatttagtttttcgtagcttaatatgatgatcattaggctcctctcatgacccaacacatttcaat |
19022959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 15021123 - 15021036
Alignment:
| Q |
19 |
actccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagc-tgaaattattttggaaaata |
105 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||| |||| | |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15021123 |
actcctgagttgaaaaaacattatgaaatgcttgtgaagtctaaggatcaggtttggtctcctaagcttgaaactattttggaaaata |
15021036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 17721493 - 17721454
Alignment:
| Q |
369 |
cataacgattgttggtcctgatagaaaagaacaatgtaca |
408 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
17721493 |
cataacaattgttggtgctgatagaaaagaacaatgtaca |
17721454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 19022722 - 19022683
Alignment:
| Q |
369 |
cataacgattgttggtcctgatagaaaagaacaatgtaca |
408 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
19022722 |
cataacaattgttggtgctgatagaaaagaacaatgtaca |
19022683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 49160740 - 49160825
Alignment:
| Q |
19 |
actccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagc-tgaaattattttggaaaa |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
49160740 |
actcctgagttgaataaacattatgaaatgcttgtgaaatctatgaatcagagttggtctcctaagcttgaaactattttggaaaa |
49160825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University