View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11972_high_1 (Length: 767)

Name: NF11972_high_1
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11972_high_1
NF11972_high_1
[»] chr6 (23 HSPs)
chr6 (251-757)||(5444204-5444711)
chr6 (19-188)||(5444774-5444943)
chr6 (602-762)||(5184705-5184865)
chr6 (67-188)||(5286313-5286434)
chr6 (599-762)||(5264094-5264257)
chr6 (544-762)||(5393210-5393428)
chr6 (598-750)||(5394451-5394603)
chr6 (67-188)||(5262333-5262454)
chr6 (58-188)||(5105062-5105192)
chr6 (550-762)||(5331573-5331785)
chr6 (65-188)||(5394731-5394854)
chr6 (63-125)||(5069266-5069328)
chr6 (67-188)||(5356815-5356936)
chr6 (63-136)||(5423487-5423560)
chr6 (63-136)||(5368194-5368267)
chr6 (63-147)||(5075920-5076004)
chr6 (83-139)||(5134120-5134176)
chr6 (64-160)||(5174582-5174678)
chr6 (64-187)||(5184142-5184265)
chr6 (48-141)||(5431142-5431235)
chr6 (699-750)||(5358080-5358131)
chr6 (707-744)||(5093048-5093085)
chr6 (63-136)||(5348145-5348218)
[»] chr2 (2 HSPs)
chr2 (67-188)||(22586505-22586626)
chr2 (672-762)||(22589029-22589119)
[»] chr3 (2 HSPs)
chr3 (65-188)||(48015496-48015619)
chr3 (359-452)||(24133636-24133729)
[»] chr4 (9 HSPs)
chr4 (359-454)||(41688503-41688598)
chr4 (63-188)||(4358098-4358223)
chr4 (63-187)||(4126626-4126750)
chr4 (63-187)||(4342631-4342755)
chr4 (673-744)||(6501157-6501228)
chr4 (63-187)||(4135733-4135857)
chr4 (58-186)||(25567613-25567741)
chr4 (63-188)||(4323291-4323416)
chr4 (359-440)||(54064642-54064723)
[»] scaffold0864 (1 HSPs)
scaffold0864 (661-762)||(4512-4613)
[»] chr7 (1 HSPs)
chr7 (359-441)||(30575966-30576048)
[»] chr1 (1 HSPs)
chr1 (359-421)||(42335795-42335857)


Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 251 - 757
Target Start/End: Complemental strand, 5444711 - 5444204
Alignment:
Q  251 tcacaagtagaggggatgcttcaacaagaaaactatagttgtatgagtgtgtgtaagttggaatgtttacaaaaagcaaatgtcaatatgcaaaaaacga 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5444711 tcacaagtagaggggatgcttcaacaagaaaactatagttgtatgagtgtgtgtaagttggaatgtttaccaaaagcaattgtcaatatgcaaaaaacga 5444612  T
Q  351 ccctaatcttgaattaagttgaacaacttggtcattctgttaactt-atatctaatttactgtcacattagtccttaaattatatcgcttactagcaaat 449  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5444611 ccctaattttgaattaagttgaacaacttggccattctgttaacatgatatctaatttactgtcacactagtccttaaattatatcgcttactagcaaat 5444512  T
Q  450 tagtctatacaagttaagagaaagaccaagctgcaagttgcttggtgtcattcaaactctgggcctttttggcctacttgaaaatctgaaaagaagtagt 549  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5444511 tagtccatacaagttaagagaaagaccaagctgcaagttgcttggtgtcattgaaactctgggcctttttggcctacttgaaaatctgaaaagaagtagt 5444412  T
Q  550 tgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctccttgttt 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5444411 tgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctcctttttt 5444312  T
Q  650 ggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccactt 749  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444311 ggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccactt 5444212  T
Q  750 gtcctatg 757  Q
    ||||||||    
T  5444211 gtcctatg 5444204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 5444943 - 5444774
Alignment:
Q  19 ccacatccctattagcagaaccccttttggttgtatgtgtagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaac 118  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444943 ccacatccctattagcagaaccccctttggttggatgtgtagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaac 5444844  T
Q  119 aagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttgacatcctcactttcattcctac 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444843 aagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttgacatcctcactttcattcctac 5444774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 602 - 762
Target Start/End: Original strand, 5184705 - 5184865
Alignment:
Q  602 gcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggat 701  Q
    |||||||||||||||| | |||||| ||||||||||| ||||| ||||  || ||| |||||||||| ||||||||||||||||||||  ||| || |||    
T  5184705 gcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgat 5184804  T
Q  702 tacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatgcttct 762  Q
     ||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||| ||||    
T  5184805 gacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatggttct 5184865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 5286313 - 5286434
Alignment:
Q  67 aatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttg 166  Q
    ||||||||||| ||| ||||||||||||||||| || ||||| | |||||| |||||||| || || | ||| ||||||||| ||| |||||||||||||    
T  5286313 aatcacatcttgcacccgagattcaattcccacagggttatttgaaataaataagtctgtcttattcaacaactgtgaaatgctgttaacaatacctttg 5286412  T
Q  167 acatcctcactttcattcctac 188  Q
    | ||||||||||||||||||||    
T  5286413 atatcctcactttcattcctac 5286434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 599 - 762
Target Start/End: Original strand, 5264094 - 5264257
Alignment:
Q  599 gctgcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcg 698  Q
    ||||||| ||||||||||| | |||||||| ||||||||| || || | ||| || ||| |||||||||  |||||||| ||||||||||| |||| ||     
T  5264094 gctgcctgacgaagagcctctctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtct 5264193  T
Q  699 gattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatgcttct 762  Q
    ||| |||||||||||| || |||| | ||||||||| ||||||||||  |||||||||| ||||    
T  5264194 gatgacgcacttcagatggttctaaatggtagaacaatggcacaaccttttgtcctatggttct 5264257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 544 - 762
Target Start/End: Complemental strand, 5393428 - 5393210
Alignment:
Q  544 agtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctcc 643  Q
    |||| |||||||| ||||||||| ||| |||| ||||  ||||||||| ||| | ||||||  |||||||||   | ||||||||||| | |||| | ||    
T  5393428 agtaattgttgaacgaaattacctggaattcagtattaaaaaccctgctatgctagctgcccgacgaagagctgctctccaacttagctctaattccacc 5393329  T
Q  644 ttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaa 743  Q
    ||||||| |  ||| ||||||| || |||||||| ||||||||||| |||| || ||| |||||||||||  ||  ||||| |||||||||| || ||||    
T  5393328 ttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgcacttcagtaggggctacatggtagaacaccggaacaa 5393229  T
Q  744 ccacttgtcctatgcttct 762  Q
    |||||| ||||||| ||||    
T  5393228 ccacttctcctatggttct 5393210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 598 - 750
Target Start/End: Complemental strand, 5394603 - 5394451
Alignment:
Q  598 tgctgcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctc 697  Q
    ||||||| |||||||||||| ||||||| ||||| |||||| | ||| ||||  || | | |||||||||| || ||| ||  |||||||||  ||| ||    
T  5394603 tgctgccacacgaagagcctctttccaatttagcgccaattccacctcgtttaaaattctgttcaaaagactttcaaacgcccttccaaactcacctttc 5394504  T
Q  698 ggattacgcacttcagagggatctacacggtagaacactggcacaaccacttg 750  Q
     |||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  5394503 tgattgcgcacttcagagggatctacatggtagaacactggaacaaccacttg 5394451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 5262333 - 5262454
Alignment:
Q  67 aatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttg 166  Q
    ||||||||||| ||| ||| ||||||||||||| || ||||| | ||||||||||||||| || || | ||| ||||||||| ||| ||||||| | |||    
T  5262333 aatcacatcttgcacccgatattcaattcccacagggttatttgaaataaacaagtctgtcttatttaacaactgtgaaatgctgttaacaatatccttg 5262432  T
Q  167 acatcctcactttcattcctac 188  Q
    | ||||||||||||||||||||    
T  5262433 atatcctcactttcattcctac 5262454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 5105062 - 5105192
Alignment:
Q  58 tagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaaca 157  Q
    |||| ||||||||| |||||  ||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| ||||||||| |  |  |||| ||||    
T  5105062 tagcagttgaatcatatcttgaactcgagattcaactcccaccggattattagcaataaacaaatctgtcttgtcaagcaaatgcgttacattgttaaca 5105161  T
Q  158 atacctttgacatcctcactttcattcctac 188  Q
    ||| | |||| | ||||||||||||||||||    
T  5105162 atatccttgataacctcactttcattcctac 5105192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 762
Target Start/End: Original strand, 5331573 - 5331785
Alignment:
Q  550 tgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctccttgttt 649  Q
    ||||||||||| |||||  ||||| | ||||  |||||||   ||||| ||||| | ||||||||||| | |||||||| ||||||||| ||||| ||||    
T  5331573 tgttgaatgaatttaccgtgacttgagtatttcaaacccttttatgttagctgcatgacgaagagcctctctccaactttgcaccaattgctcctcgttt 5331672  T
Q  650 ggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccactt 749  Q
    | || ||| ||||||| || ||||||   | ||||||| | |||| || ||| |||||||| ||| || |||| | ||||||||||||||||||||  |     
T  5331673 gaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgcactttagatggttctaaatggtagaacactggcacaaccttta 5331772  T
Q  750 gtcctatgcttct 762  Q
    |||||||| ||||    
T  5331773 gtcctatggttct 5331785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 5394854 - 5394731
Alignment:
Q  65 tgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctt 164  Q
    ||||||||||||   || |||||||| |  |||||||||| ||| |||||||||||||||||||||| ||||||| ||||||| || ||||||||  | |    
T  5394854 tgaatcacatctcgtacccgagattccacgcccactggataattagcaataaacaagtctgttttgtcaagcaaacgtgaaatattttcaacaatgtcat 5394755  T
Q  165 tgacatcctcactttcattcctac 188  Q
    |||   | ||||||||||||||||    
T  5394754 tgattgcgtcactttcattcctac 5394731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 5069266 - 5069328
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctg 125  Q
    ||||||||| ||| | |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  5069266 gttgaatcatatcctgcactcgagattcaactcccactggattattagcaataaacaagtctg 5069328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 5356815 - 5356936
Alignment:
Q  67 aatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttg 166  Q
    ||||| ||||| ||| |||||||||| |||||| |||||||| |||| ||| |||||||| |||| ||||||| ||| ||| || | ||||||| | |||    
T  5356815 aatcatatcttgcacacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttttaacaatatccttg 5356914  T
Q  167 acatcctcactttcattcctac 188  Q
    | | | ||||||||||||||||    
T  5356915 atagcttcactttcattcctac 5356936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 5423560 - 5423487
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagc 136  Q
    ||||||||| ||||| |||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| ||||    
T  5423560 gttgaatcatatcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagc 5423487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 5368267 - 5368194
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagc 136  Q
    ||||||||| | ||| |||||||||||||| ||||||||||||||  ||||||||||| ||||| |||| ||||    
T  5368267 gttgaatcataccttgcactcgagattcaactcccactggattatcagcaataaacaattctgtcttgtcaagc 5368194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 5075920 - 5076004
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaat 147  Q
    ||||||||| |||||  ||||||||||| | ||||||||||||||  ||||| ||||| ||||| |||| ||||||| |||||||    
T  5075920 gttgaatcatatcttctactcgagattcgactcccactggattatcagcaatgaacaaatctgtcttgtcaagcaaacgtgaaat 5076004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 5134120 - 5134176
Alignment:
Q  83 cgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaa 139  Q
    |||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||    
T  5134120 cgagattcaactcccactggattattagcaataaacaaatctattttgtcaagcaaa 5134176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 5174678 - 5174582
Alignment:
Q  64 ttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaata 160  Q
    |||||||| ||||| |||||||||||| | |||||| |||||||  |||| |||||||||||| |||| ||  ||| ||||||  ||||||||||||    
T  5174678 ttgaatcatatcttgcactcgagattcgagtcccaccggattatcagcaacaaacaagtctgtcttgtcaataaaacgtgaaactttgtcaacaata 5174582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 5184142 - 5184265
Alignment:
Q  64 ttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacct 163  Q
    |||||||||||||   ||||||||||| | |||||| ||||||| |||||| ||||| ||||| |||   |||||||||| ||  || ||||||||  ||    
T  5184142 ttgaatcacatctcgtactcgagattcgactcccaccggattatccgcaatgaacaaatctgtcttgcctagcaaatgtgtaacattttcaacaatgtct 5184241  T
Q  164 ttgacatcctcactttcattccta 187  Q
    ||||   |||||||||||||||||    
T  5184242 ttgattgcctcactttcattccta 5184265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 5431235 - 5431142
Alignment:
Q  48 gttgtatgtgtagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatg 141  Q
    |||| |||| |||| ||||||| ||||||| || |||||| |||||||||||||| ||||  ||||| |||| |||| | |||| |||||||||    
T  5431235 gttggatgtctagccgttgaataacatcttgcattcgagaatcaattcccactggcttatcagcaatgaacatgtctttcttgtcaagcaaatg 5431142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 750
Target Start/End: Original strand, 5358080 - 5358131
Alignment:
Q  699 gattacgcacttcagagggatctacacggtagaacactggcacaaccacttg 750  Q
    ||||||| |||||||| |||||||||| |||||||||||||| ||| |||||    
T  5358080 gattacgtacttcagatggatctacaccgtagaacactggcaaaacaacttg 5358131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 744
Target Start/End: Complemental strand, 5093085 - 5093048
Alignment:
Q  707 acttcagagggatctacacggtagaacactggcacaac 744  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  5093085 acttcagagggatctacatcgtagaacactggcacaac 5093048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 5348218 - 5348145
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagc 136  Q
    ||||||||| ||| | || || |||||||| ||||||||||||||| |||||||| || ||||  |||||||||    
T  5348218 gttgaatcatatcctgcaatctagattcaactcccactggattattagcaataaataaatctgccttgttaagc 5348145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 22586505 - 22586626
Alignment:
Q  67 aatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctttg 166  Q
    ||||||||||||||||||||||| ||||||||| || |||| || ||||||||||||||| || || | ||| | ||||||   |||||||||| | |||    
T  22586505 aatcacatctttcactcgagattgaattcccacagggttatccgaaataaacaagtctgtcttattcaacaagtctgaaataaggtcaacaatagcattg 22586604  T
Q  167 acatcctcactttcattcctac 188  Q
    | || |||||||||||||||||    
T  22586605 atatactcactttcattcctac 22586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 762
Target Start/End: Original strand, 22589029 - 22589119
Alignment:
Q  672 gaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatgcttct 762  Q
    |||||| ||||||||||| |||| || |||  ||||||||||| || |||| | |||||||||| | |||||||  |||||||||| ||||    
T  22589029 gaaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatggttct 22589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 48015496 - 48015619
Alignment:
Q  65 tgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacctt 164  Q
    ||||||| ||||  ||||| ||||||||| ||||||| |||||| ||||||||||||||||| |||| ||||||  ||| ||| || ||||||||| |||    
T  48015496 tgaatcatatctcgcactcaagattcaatccccactgaattattagcaataaacaagtctgtcttgtcaagcaatcgtgtaatattttcaacaatatctt 48015595  T
Q  165 tgacatcctcactttcattcctac 188  Q
    | | | |||| |||||||||||||    
T  48015596 taataacctcgctttcattcctac 48015619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 452
Target Start/End: Complemental strand, 24133729 - 24133636
Alignment:
Q  359 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttactagcaaattag 452  Q
    |||||||| || || ||| |||||| |||| ||||||| |||||||||| |||||| || ||||| | || |||||| |||| |||||||||||    
T  24133729 ttgaattacgtcgagcaaattggtccttctattaacttgtatctaattttctgtcaaatcagtccctgaagtatatcacttaatagcaaattag 24133636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 41688598 - 41688503
Alignment:
Q  359 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttactagcaaattagtc 454  Q
    |||||||| || || |||||||||  |||| ||||||| ||||||||||||||||| ||||| ||  |||||||||  ||||||||||||||||||    
T  41688598 ttgaattatgtcgagcaacttggttcttctattaacttgtatctaatttactgtcaaattagcccccaaattatattacttactagcaaattagtc 41688503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 4358223 - 4358098
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 162  Q
    ||||||||| ||||| ||||||||| || | ||| ||||||||||  ||||| ||||||||||| |||| ||||||| | | ||  || ||||||||| |    
T  4358223 gttgaatcatatcttgcactcgagaatcgactcctactggattatcagcaatgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatatc 4358124  T
Q  163 tttgacatcctcactttcattcctac 188  Q
      ||| | ||||||||||||||||||    
T  4358123 cctgataacctcactttcattcctac 4358098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 4126626 - 4126750
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 162  Q
    ||||||||| ||||| |||||||||||| | ||| || |||||||  ||||| ||||||||||| |||| |||||||| || ||  || ||||||||| |    
T  4126626 gttgaatcatatcttgcactcgagattcgactccgacaggattatcagcaatgaacaagtctgtcttgtcaagcaaatttgtaacattttcaacaatatc 4126725  T
Q  163 tttgacatcctcactttcattccta 187  Q
     |||| | |||||| ||| ||||||    
T  4126726 cttgataacctcacattcgttccta 4126750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 4342755 - 4342631
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 162  Q
    ||||||||| ||||| ||||||||| || | ||| || |||| ||  ||||| ||||||||||| |||| ||||||| ||  ||  || ||||||||| |    
T  4342755 gttgaatcatatcttgcactcgagaatcgactccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatc 4342656  T
Q  163 tttgacatcctcactttcattccta 187  Q
    ||||| | |||||||||||||||||    
T  4342655 tttgataacctcactttcattccta 4342631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 744
Target Start/End: Original strand, 6501157 - 6501228
Alignment:
Q  673 aaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaac 744  Q
    ||||||| |||||||||| ||| || ||| ||| |||||||||||||||||   ||||||||||||||||||    
T  6501157 aaaagcttttccaaacttacctttctgatgacgtacttcagagggatctacctcgtagaacactggcacaac 6501228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 4135733 - 4135857
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 162  Q
    ||||||||| ||||  |||||||||||| | ||  |||||||  |  ||||| |||| |||||| |||| ||||||||||| ||  || ||||||||| |    
T  4135733 gttgaatcatatctagcactcgagattcgactctaactggatggtcagcaatgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatatc 4135832  T
Q  163 tttgacatcctcactttcattccta 187  Q
     |||| |||||||||||| ||||||    
T  4135833 cttgatatcctcactttcgttccta 4135857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 25567741 - 25567613
Alignment:
Q  58 tagctgttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaaca 157  Q
    |||| ||||||||| || || |||||||| ||||| ||||||||||||||| |||| || ||||| ||| ||||  |||||| |    || || ||||||    
T  25567741 tagcagttgaatcatattttccactcgaggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaaca 25567642  T
Q  158 atacctttgacatcctcactttcattcct 186  Q
    ||| | |||| | ||||||||||||||||    
T  25567641 atatccttgatagcctcactttcattcct 25567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 4323291 - 4323416
Alignment:
Q  63 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 162  Q
    ||||||||| ||||| ||||||||| || || ||||| |||||||  ||||  ||||||||||| ||||  || ||| ||| ||  || ||||||||| |    
T  4323291 gttgaatcatatcttgcactcgagaatcgatacccacaggattatcagcaacgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatatc 4323390  T
Q  163 tttgacatcctcactttcattcctac 188  Q
     |||| | |||||||||| |||||||    
T  4323391 cttgataacctcactttcgttcctac 4323416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 54064723 - 54064642
Alignment:
Q  359 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgctta 440  Q
    |||||||| || || || ||||||| ||||  |||||| ||||||||||| ||||| ||||||| || ||||||||| ||||    
T  54064723 ttgaattatgtggagcagcttggtccttctaataacttgtatctaatttaatgtcaaattagtcattgaattatatcactta 54064642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 762
Target Start/End: Complemental strand, 4613 - 4512
Alignment:
Q  661 caaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatgctt 760  Q
    |||||||| |||||||| || |||||||| |||| || |||  ||||||||||| || |||| | |||| ||||| |||||||||  |||||||||| ||    
T  4613 caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatggtt 4514  T
Q  761 ct 762  Q
    ||    
T  4513 ct 4512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 441
Target Start/End: Complemental strand, 30576048 - 30575966
Alignment:
Q  359 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttac 441  Q
    ||||||||||| || ||  |||||| || || ||||||  |||||||||||| ||| |||||||| ||||||||||| |||||    
T  30576048 ttgaattaagtcgagcaggttggtccttttgataacttggatctaatttactttcaaattagtccctaaattatatcacttac 30575966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 42335795 - 42335857
Alignment:
Q  359 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagt 421  Q
    |||||||| ||||| ||||||| ||||||||||  ||| |||||||||||| |||| ||||||    
T  42335795 ttgaattatgttgagcaacttgatcattctgttggcttgtatctaatttacagtcaaattagt 42335857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University