View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11972_high_4 (Length: 413)
Name: NF11972_high_4
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11972_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 38990949 - 38991334
Alignment:
| Q |
18 |
cttccctacaacaattccaccatacacttgaccatgactaccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38990949 |
cttccctacaacaattccaccatacacttgaccatgactaccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaaca |
38991048 |
T |
|
| Q |
118 |
ttatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
38991049 |
ttatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgagataacgagctgtgaatgg |
38991148 |
T |
|
| Q |
218 |
tgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagg |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38991149 |
tgatgtcagagacaataccaaaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagg |
38991248 |
T |
|
| Q |
318 |
gatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccctttg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38991249 |
gatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtgtcttgggcttgtttttggagccctttg |
38991334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 56 - 403
Target Start/End: Complemental strand, 38954788 - 38954441
Alignment:
| Q |
56 |
taccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagaga |
155 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38954788 |
taccagataggaaaatgctaaaagaagaatggttagggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagaga |
38954689 |
T |
|
| Q |
156 |
cgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtg |
255 |
Q |
| |
|
| |||||| || |||||||||||||| |||| |||| ||| ||| |||||| | ||||| || | |||||||| ||| |||||||||| |||| | |
|
|
| T |
38954688 |
catcattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctcattactgag |
38954589 |
T |
|
| Q |
256 |
atgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggct |
355 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||| | ||||| ||||| ||||||||||| || ||| ||||| |
|
|
| T |
38954588 |
atatcagcttgatgacgccaagccatcttgatgatggactccacaacatcacatccagctgatatttcgataaaaatttgtttcataaaactttcaggct |
38954489 |
T |
|
| Q |
356 |
ctaccataaccaccgcaggtggcttgggcttgtttttggagccctttg |
403 |
Q |
| |
|
|||| | | |||| | || || ||||| || |||||||||||||||| |
|
|
| T |
38954488 |
ctacggtgatcaccactgggggtttgggtttatttttggagccctttg |
38954441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 377
Target Start/End: Original strand, 18528036 - 18528173
Alignment:
| Q |
239 |
aacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgttt |
338 |
Q |
| |
|
||||||||||||||| |||||| |||| || ||||||| ||| |||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
|
|
| T |
18528036 |
aacctctcagcactgagatgtctgcttgataacgccaattcattttgatgatggactccacaacatcatactcaatagggattttaataaaaatttgttt |
18528135 |
T |
|
| Q |
339 |
cattaatgtttgaggctctaccataaccaccgcaggtgg |
377 |
Q |
| |
|
|| ||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
18528136 |
ca-taaggtttcaggctctaccataatcaccacaggtgg |
18528173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 18527925 - 18527760
Alignment:
| Q |
238 |
gaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtt |
337 |
Q |
| |
|
|||||||||| ||| | |||||| || ||| |||||||||||| ||||||||| |||| || |||||| ||||| |||||||||||| ||| ||| |
|
|
| T |
18527925 |
gaacctctcatcacagatatgtcatctagatgtcgccaagccatcctgatgatggtttccataaaatcatatatagcagagatttcaataaaaattagtt |
18527826 |
T |
|
| Q |
338 |
tcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccctttg |
403 |
Q |
| |
|
|||| || |||| || |||||||| | |||| || ||| ||||| ||||| ||| ||||||||| |
|
|
| T |
18527825 |
tcataaaagttttgggatctaccatgatcaccacatatggtttgggtttgttcttgtagccctttg |
18527760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University