View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11972_high_8 (Length: 292)
Name: NF11972_high_8
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11972_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 34933409 - 34933683
Alignment:
| Q |
2 |
cagaaagagacatatatgataatcagcttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaa |
101 |
Q |
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| T |
34933409 |
cagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaa |
34933508 |
T |
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| Q |
102 |
atatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaac |
201 |
Q |
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| T |
34933509 |
atatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaac |
34933599 |
T |
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| Q |
202 |
ccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttcttcttctacaacttcttctca |
285 |
Q |
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| T |
34933600 |
cctagagattacgaacgaaaactatcatgcaatgaaaatacatagatacgttggagcttcttcttcttctacaacttcttctca |
34933683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 65 - 285
Target Start/End: Original strand, 34926958 - 34927175
Alignment:
| Q |
65 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
164 |
Q |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
165 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttc |
264 |
Q |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagataccttcaag---cttc |
34927154 |
T |
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| Q |
265 |
ttcttctacaacttcttctca |
285 |
Q |
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| T |
34927155 |
ttcttctacaacttcttctca |
34927175 |
T |
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