View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11972_low_12 (Length: 224)

Name: NF11972_low_12
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11972_low_12
NF11972_low_12
[»] chr4 (9 HSPs)
chr4 (14-205)||(22297170-22297361)
chr4 (36-170)||(52998822-52998955)
chr4 (36-83)||(48747717-48747764)
chr4 (52-102)||(23975193-23975243)
chr4 (42-76)||(28572486-28572520)
chr4 (52-101)||(4214576-4214625)
chr4 (36-113)||(12216138-12216215)
chr4 (45-129)||(30242463-30242545)
chr4 (121-205)||(11093859-11093942)
[»] chr2 (2 HSPs)
chr2 (54-196)||(13517050-13517192)
chr2 (47-195)||(7707193-7707341)
[»] chr5 (1 HSPs)
chr5 (36-128)||(19964284-19964376)
[»] chr1 (3 HSPs)
chr1 (45-205)||(8746838-8746997)
chr1 (27-131)||(25425669-25425771)
chr1 (45-132)||(36977194-36977280)
[»] chr7 (1 HSPs)
chr7 (36-103)||(12864564-12864631)
[»] chr6 (2 HSPs)
chr6 (48-102)||(10504550-10504604)
chr6 (48-132)||(26297397-26297481)
[»] chr3 (1 HSPs)
chr3 (47-132)||(10950548-10950633)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 22297170 - 22297361
Alignment:
Q  14 caaaggagaagtctctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  22297170 caaaggagaagtctctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttagttgcaatgtgtaactaaacatccattgat 22297269  T
Q  114 tatggttctaagatgaaccacttttcaatttttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgt 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  22297270 tatggttctaagatgaaccactgttcaatttttggattttattaatacaagtattttcttcagttatattgtaagatctatttaatctttgt 22297361  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 52998822 - 52998955
Alignment:
Q  36 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccact 135  Q
    ||||| || ||||||||||||||| |||||||||||| | | |||||  || ||||| || ||||||||||  ||||||| | ||||| |||||| | ||    
T  52998822 aacctttgttcttagagtatgttttatttcttttgtattatgtattttgttacaatgagtgactaaacaccttttgattaggtttctatgatgaatctct 52998921  T
Q  136 tttcaatttttggattttattaatacaagtatttt 170  Q
     || | || ||||||||||||||||||||| ||||    
T  52998922 att-atttattggattttattaatacaagtctttt 52998955  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 48747764 - 48747717
Alignment:
Q  36 aacctgtgctcttagagtatgtttaatttcttttgtaatttatattta 83  Q
    ||||| || ||||||||||||||| |||||||||||||||||| ||||    
T  48747764 aacctttgttcttagagtatgttttatttcttttgtaatttattttta 48747717  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 23975243 - 23975193
Alignment:
Q  52 gtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaa 102  Q
    |||||||| |||||||||||||||| | |||| |||| |||||||||||||    
T  23975243 gtatgttttatttcttttgtaatttgtctttagttgccatgtgtaactaaa 23975193  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 28572520 - 28572486
Alignment:
Q  42 tgctcttagagtatgtttaatttcttttgtaattt 76  Q
    |||||||||||||||||| ||||||||||||||||    
T  28572520 tgctcttagagtatgttttatttcttttgtaattt 28572486  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 4214576 - 4214625
Alignment:
Q  52 gtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaa 101  Q
    |||||||| ||||||||||||||||||||||| || | ||| ||||||||    
T  4214576 gtatgttttatttcttttgtaatttatatttagttcccatgagtaactaa 4214625  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 12216138 - 12216215
Alignment:
Q  36 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgat 113  Q
    ||||| || ||||||||||||||| |||||||||||||||  | |||| || | ||| ||||||||| ||| ||||||    
T  12216138 aacctttgttcttagagtatgttttatttcttttgtaattcgtctttagttaccatgagtaactaaatacctattgat 12216215  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 30242545 - 30242463
Alignment:
Q  45 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatga 129  Q
    ||||||||||||||  |||||||||||||||||| ||||  | | ||| |||||||||| |  |||||||| |||||||| ||||    
T  30242545 tcttagagtatgtt--atttcttttgtaatttatttttaggtactatgagtaactaaaccctaattgattagggttctaatatga 30242463  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 11093942 - 11093859
Alignment:
Q  121 ctaagatgaaccacttttcaatttttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgt 205  Q
    ||||||||||||  |||| |||| || |||| ||||||| |||||  ||| |||  |||| ||||||||||||||||||||||||    
T  11093942 ctaagatgaacctatttt-aattgtttgattctattaatgcaagtcatttattcaattatgttttaagatctatttaatctttgt 11093859  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 13517050 - 13517192
Alignment:
Q  54 atgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaatttttggatttt 153  Q
    |||||| ||||||||| |||||||| |||| || | ||| ||||||||||||| |||||||| |||||| ||||||| | || ||   || ||||||||     
T  13517050 atgttttatttcttttttaatttatctttagttaccatgagtaactaaacacctattgattaaggttctgagatgaatctctatttgtttgttggatttc 13517149  T
Q  154 attaatacaagtattttcttcggttatattttaagatctattt 196  Q
    ||| |||||||| |||| ||| |||||||||||||||||||||    
T  13517150 attcatacaagtcttttattcagttatattttaagatctattt 13517192  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 7707341 - 7707193
Alignment:
Q  47 ttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattttt 146  Q
    ||||||||| ||| |||||||||||| | ||| |||  || | ||| |||||||||||||| ||||||| ||||||||||| ||||  | || | || ||    
T  7707341 ttagagtatattttatttcttttgtattatatcttttgttaccatgagtaactaaacaccctttgattagggttctaagatcaacctttatttatttgtt 7707242  T
Q  147 ggattttattaatacaagtattttcttcggttatattttaagatctatt 195  Q
    ||||| | || || ||||| |||||||| |||||  ||| |||||||||    
T  7707241 ggattatgttcatgcaagtcttttcttcagttatgatttgagatctatt 7707193  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 19964376 - 19964284
Alignment:
Q  36 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatg 128  Q
    ||||| || ||||||||||| ||| |||||||||| ||||||| ||||||| | ||| ||||||||||||| |||||||| ||||||||||||    
T  19964376 aacctttgttcttagagtatattttatttcttttgaaatttatctttaattacgatgagtaactaaacacctattgattaaggttctaagatg 19964284  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 8746838 - 8746997
Alignment:
Q  45 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaaccacttttcaattt 144  Q
    ||||||||||||||| |||||||||||||||||| ||| ||| | ||| |||| |||||| |  ||||||| ||||||||||| |||| || || | ||     
T  8746838 tcttagagtatgttttatttcttttgtaatttatctttgattaccatgagtaattaaaca-cttttgattagggttctaagataaacctctatttattta 8746936  T
Q  145 ttggattttattaatacaagtattttcttcggttatattttaagatctatttaatctttgt 205  Q
    || ||||||||||||| || |||||| ||| |||||  ||||||||  ||||||| |||||    
T  8746937 ttagattttattaataaaattattttattcagttattatttaagatgcatttaatttttgt 8746997  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 25425771 - 25425669
Alignment:
Q  27 tctcaccttaacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaaga 126  Q
    |||| ||||||||| || ||||||||| |||||| ||||||||||||||| | |||  || ||||| ||||||||||||| |||||||| ||||||||||    
T  25425771 tctctccttaacctttgttcttagagtttgttta-tttcttttgtaatttgtctttggttacaatgagtaactaaacacctattgatta-ggttctaaga 25425674  T
Q  127 tgaac 131  Q
    |||||    
T  25425673 tgaac 25425669  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 36977280 - 36977194
Alignment:
Q  45 tcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaacc 132  Q
    ||||||||||  ||| |||||||| ||||||| | |||| || | ||| ||||||||||||| |||||||| ||||||| ||||||||    
T  36977280 tcttagagtacattttatttcttt-gtaatttgtctttagttaccatgcgtaactaaacacctattgattagggttctatgatgaacc 36977194  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 12864631 - 12864564
Alignment:
Q  36 aacctgtgctcttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaac 103  Q
    ||||| || |||||||||||||||  |||||||||||||||||||||| |||| ||| ||||||||||    
T  12864631 aacctttgttcttagagtatgttttgtttcttttgtaatttatatttagttgccatgagtaactaaac 12864564  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 10504604 - 10504550
Alignment:
Q  48 tagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaa 102  Q
    |||||||||||| |||||||||||||||||| |||| |||| |||||||||||||    
T  10504604 tagagtatgttttatttcttttgtaatttatctttagttgccatgtgtaactaaa 10504550  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 26297481 - 26297397
Alignment:
Q  48 tagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaacc 132  Q
    |||||||||||| |||||||||||||||||| |||  || | ||| |||||| ||| |  ||| | || ||||||||||||||||    
T  26297481 tagagtatgttttatttcttttgtaatttatctttggttaccatgagtaactcaaccctaattaaatagggttctaagatgaacc 26297397  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 10950633 - 10950548
Alignment:
Q  47 ttagagtatgtttaatttcttttgtaatttatatttaattgcaatgtgtaactaaacacccattgattatggttctaagatgaacc 132  Q
    ||||||||||||| ||||||||| |||||| | |||| ||   ||  ||||||||||||| ||| |||| ||||||||||||||||    
T  10950633 ttagagtatgttttatttcttttataatttgtctttagttaacataagtaactaaacacctattaattaaggttctaagatgaacc 10950548  T

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