View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11972_low_3 (Length: 428)
Name: NF11972_low_3
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11972_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 49858547 - 49858147
Alignment:
| Q |
19 |
gctattacattcaatttagaaaagtattgaagagttttattacaaatttgaatattattcataaaccattttcacacgcttttggagaaccatagcctcc |
118 |
Q |
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| T |
49858547 |
gctattacattcaatttagaaaagtattgaagagttttattacaaatttgaatattattcataaaccattttcacacgcttttggagaaccatagcctcc |
49858448 |
T |
|
| Q |
119 |
tagagctctcccattcaaacatccaaactacgcatacttccttccggttcctgatgaacatagtcattcttaagcataagggagcaattcttaccatagg |
218 |
Q |
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| T |
49858447 |
tagagctctcccgttcaaacatccaaactacgcatacttccttccggttcctgatgaacatagtcattcttaagcataagggagcaattcttaccatagg |
49858348 |
T |
|
| Q |
219 |
aaaactcattgatgaattctcattggttgctgataagcctataattgcacagttttattgtgtagtaaaagatattgatcccacaggagactagagttaa |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49858347 |
aaaactcattgatcaattctcattggttgctgataagcctataattgcacagttttattgtgtagtaaaagatattgatcccacaggagactagagttaa |
49858248 |
T |
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| Q |
319 |
taaccaatctcctttactaagttaattaactaaaaaattgaatttttagattgagttggatttccatcacaaaatagaattttctatcccaagatcctat |
418 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49858247 |
taaccaatctcctttactaagttaattagctaaaaaattgaatttttagattgagttggatttccatcacaaaatagaattttctatcccaagctcctat |
49858148 |
T |
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| Q |
419 |
g |
419 |
Q |
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| T |
49858147 |
g |
49858147 |
T |
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