View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11972_low_8 (Length: 295)

Name: NF11972_low_8
Description: NF11972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11972_low_8
NF11972_low_8
[»] chr8 (15 HSPs)
chr8 (73-278)||(6264907-6265112)
chr8 (130-267)||(6371291-6371428)
chr8 (128-265)||(7460661-7460798)
chr8 (128-258)||(6290504-6290634)
chr8 (128-258)||(6353596-6353726)
chr8 (128-258)||(6364469-6364599)
chr8 (128-258)||(6425286-6425416)
chr8 (128-268)||(6333170-6333310)
chr8 (128-268)||(6275742-6275882)
chr8 (128-268)||(6322603-6322743)
chr8 (134-256)||(6392094-6392216)
chr8 (1-81)||(6265155-6265236)
chr8 (173-256)||(6411258-6411341)
chr8 (169-255)||(6458262-6458348)
chr8 (169-250)||(6452174-6452255)
[»] chr2 (1 HSPs)
chr2 (131-252)||(42694394-42694515)
[»] chr5 (1 HSPs)
chr5 (128-250)||(9603046-9603168)
[»] chr3 (1 HSPs)
chr3 (179-255)||(36743945-36744021)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 6265112 - 6264907
Alignment:
Q  73 aaaaatcttaaagtgtgtaacatcaaatacataaaatatattgcagacttttctaccaagtgaaacacctgctccacttgtctactatagacaattagag 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6265112 aaaaatcttaaagtgtgtaacatcaaatacataaaatatattgcagacttttctaccaagtgaaacacctgctccacttgtctactatagacaattagag 6265013  T
Q  173 ttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgggtgaccccgacaagggtc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6265012 ttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgggtgaccccgacaagggtc 6264913  T
Q  273 aaagct 278  Q
    ||||||    
T  6264912 aaagct 6264907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 6371428 - 6371291
Alignment:
Q  130 aagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttat 229  Q
    |||||||||||| |||||| | |||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  | |||    
T  6371428 aagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctat 6371329  T
Q  230 gattatgatgtttacaatgatttgggtgaccccgacaa 267  Q
    || || ||||| ||||||||||||||||| || |||||    
T  6371328 gactacgatgtctacaatgatttgggtgaaccagacaa 6371291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 7460798 - 7460661
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    ||||||| |||||| |||||| | || ||||| ||||||  ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| | |    
T  7460798 ccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatat 7460699  T
Q  228 atgattatgatgtttacaatgatttgggtgaccccgac 265  Q
    ||||||||||||| |||||||| |||||||| ||||||    
T  7460698 atgattatgatgtctacaatgacttgggtgatcccgac 7460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 6290634 - 6290504
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||||||||||| |||||| | || ||||||||||||  ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||| | |    
T  6290634 ccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatat 6290535  T
Q  228 atgattatgatgtttacaatgatttgggtga 258  Q
    ||||||| ||||| ||||||||||| |||||    
T  6290534 atgattacgatgtctacaatgatttaggtga 6290504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 6353726 - 6353596
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||||||||||| |||||| | || ||||| ||||||  ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||| | |    
T  6353726 ccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatat 6353627  T
Q  228 atgattatgatgtttacaatgatttgggtga 258  Q
    ||||||| ||||| |||||||||||||||||    
T  6353626 atgattacgatgtctacaatgatttgggtga 6353596  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 6364599 - 6364469
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||||||||||| |||||  | |||||||| ||||||  ||| |||||||||||||||||||||||||| || ||||| || |||||||| ||| | |    
T  6364599 ccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatat 6364500  T
Q  228 atgattatgatgtttacaatgatttgggtga 258  Q
    ||||||||||||| |||||||||||||||||    
T  6364499 atgattatgatgtctacaatgatttgggtga 6364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 6425416 - 6425286
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||||||||||| |||||| | || ||||||||||||  |||||||||||||||||||||||||||||  || |||||||| |||||||| ||  | |    
T  6425416 ccaagtgaaacaccggctccattggtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatct 6425317  T
Q  228 atgattatgatgtttacaatgatttgggtga 258  Q
    ||||||| ||||| |||||||||||||||||    
T  6425316 atgattacgatgtctacaatgatttgggtga 6425286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 6333310 - 6333170
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    ||||| |||||||| |||||| | |||||||| ||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||  | |    
T  6333310 ccaagcgaaacaccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatct 6333211  T
Q  228 atgattatgatgtttacaatgatttgggtgaccccgacaag 268  Q
    |||| || |||||||||||||| |||||||| || ||||||    
T  6333210 atgactacgatgtttacaatgacttgggtgatcctgacaag 6333170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 6275882 - 6275742
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    ||||||||||||||  ||||| | |||||||||||||||  ||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||  | |    
T  6275882 ccaagtgaaacaccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatct 6275783  T
Q  228 atgattatgatgtttacaatgatttgggtgaccccgacaag 268  Q
    |||| || ||||| ||||||||| ||||||| || ||||||    
T  6275782 atgactacgatgtctacaatgatgtgggtgatcctgacaag 6275742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 6322743 - 6322603
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||||||||||| |||||| | |||||||||||| ||  ||| |||||||||||||||||||||||||||||  ||||||| |||   || ||| | |    
T  6322743 ccaagtgaaacaccagctccattagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatct 6322644  T
Q  228 atgattatgatgtttacaatgatttgggtgaccccgacaag 268  Q
    |||| || |||||||||||||| |||||||| || ||||||    
T  6322643 atgactacgatgtttacaatgacttgggtgatcctgacaag 6322603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 6392216 - 6392094
Alignment:
Q  134 gaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgatt 233  Q
    |||||||| |||||| |  | ||||| ||||||  ||| ||||| |||||||||||||||||||| || ||||| || |||||||||||| | |||||||    
T  6392216 gaaacaccagctccattactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgatt 6392117  T
Q  234 atgatgtttacaatgatttgggt 256  Q
    ||||||| |||||||||||||||    
T  6392116 atgatgtctacaatgatttgggt 6392094  T

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Target: chr8; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6265236 - 6265155
Alignment:
Q  1 ttaatatgttagtttgcttgagaaacaagctaaccgatgtcatggattatcatctc--atactataccaataataaaaatctt 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||| |  |||||||||||||||||||||||||    
T  6265236 ttaatatgttagtt-gcttgagaaacaagctaaccgatgtcatacattatcatcacatatactataccaataataaaaatctt 6265155  T

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Target: chr8; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 6411341 - 6411258
Alignment:
Q  173 ttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgggt 256  Q
    |||||||||||||||||||||||||| || ||||| || | |||||||||| | |||||||||||||| |||||||||||||||    
T  6411341 ttgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggt 6411258  T

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Target: chr8; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 6458348 - 6458262
Alignment:
Q  169 agagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 255  Q
    ||||||| ||||| |||||||||||||||| || ||||||||||||  ||| |||||||||||||||||| |||| |||||||||||    
T  6458348 agagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg 6458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 6452255 - 6452174
Alignment:
Q  169 agagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgat 250  Q
    ||||||| ||| | |||||||||||||||| || || |||||||||||||| ||  | || |||||||||||||| ||||||    
T  6452255 agagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat 6452174  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 42694515 - 42694394
Alignment:
Q  131 agtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatg 230  Q
    ||||||||||| |||||| | ||| | |||||| ||  ||| ||||| | |||||||||||||||||| || || |||||||||||||| ||| | ||||    
T  42694515 agtgaaacaccggctccattagtccattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatg 42694416  T
Q  231 attatgatgtttacaatgattt 252  Q
    |||||||||| |||||||||||    
T  42694415 attatgatgtctacaatgattt 42694394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 9603046 - 9603168
Alignment:
Q  128 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 227  Q
    |||||| ||||||| |||||| | |||||||| ||||||  ||| ||| | | | ||||||||||||| || ||  | || ||||||||||| |||||||    
T  9603046 ccaagtcaaacaccagctccattagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagttt 9603145  T
Q  228 atgattatgatgtttacaatgat 250  Q
    ||||||||||||| |||||||||    
T  9603146 atgattatgatgtctacaatgat 9603168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 36743945 - 36744021
Alignment:
Q  179 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 255  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  36743945 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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