View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11973_high_3 (Length: 268)
Name: NF11973_high_3
Description: NF11973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11973_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 2105206 - 2105308
Alignment:
| Q |
19 |
acgtccttccttgccaagcccaaataacttggtttaccacttaacatatggtaatgataattacttgtttatttgaacacattgaatagctcaactaatt |
118 |
Q |
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| T |
2105206 |
acgtccttccttgccaagtccaaacaacttggtttaccacttaacatatggtaatgataattacttgtttatttgaacacattgaatagctcaactaatt |
2105305 |
T |
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| Q |
119 |
tga |
121 |
Q |
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||| |
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| T |
2105306 |
tga |
2105308 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 2105330 - 2105386
Alignment:
| Q |
121 |
aaacctcgatgaaagagaaaaaattaattcaaaaactagctaataatatttgtcatt |
177 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2105330 |
aaacctagatgaaagaaaaaaaattaattcaaaaactagctaataatatttgtcatt |
2105386 |
T |
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