View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11973_low_1 (Length: 451)
Name: NF11973_low_1
Description: NF11973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11973_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 1585456 - 1585035
Alignment:
| Q |
19 |
caagggacacgtgtaggattctattcaagtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttctttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585456 |
caagggacacgtgtaggattctattcaagtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttctttag |
1585357 |
T |
|
| Q |
119 |
ctcctggtttacttaggatgcactttcatgattgttttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585356 |
ctcctggtttacttaggatgcactttcatgattgttttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttcc |
1585257 |
T |
|
| Q |
219 |
aaaccttggtttaagaggttttgaagttattgatgatgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatcgttgctctt |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585256 |
aaaccttggtttaagaggttttgaagttattgaggatgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatcgttgctctt |
1585157 |
T |
|
| Q |
319 |
gctgctcgtgattccgttgttctggtaattaactaacttaactatatattgtacaaatgatagtaaaggagatactgctaaaaatgttgaattaattagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585156 |
gctgctcgtgattccgttgttctggtaattaactaacttaactatatattgtacaaatgatagtaaaggagatactgctaaaaatgttgaattaattagt |
1585057 |
T |
|
| Q |
419 |
tacacaaatataaatttgatgt |
440 |
Q |
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||||||||||||||||| |||| |
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| T |
1585056 |
tacacaaatataaattttatgt |
1585035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 155 - 412
Target Start/End: Original strand, 1591551 - 1591806
Alignment:
| Q |
155 |
ttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgatga |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1591551 |
ttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgagga |
1591650 |
T |
|
| Q |
255 |
tgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatcgttgctcttgctgctcgtgattccgttgttctggtaattaactaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1591651 |
tgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgccgatatcctttcccttgctgctcgtgattccgttgttctggtaattaactaa |
1591750 |
T |
|
| Q |
355 |
cttaactatatattgtacaaatgatagtaaaggagatactgcta-aaaatgttgaatta |
412 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||| |
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| T |
1591751 |
attaactatatattgtacaaatga---taaatgagatactactagaaaatgttgaatta |
1591806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 1591443 - 1591552
Alignment:
| Q |
18 |
tcaagggacacgtgtaggattctattcaagtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttcttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
1591443 |
tcaagggacacgtgtaggattctattcaagtacatgttctcaagcagaatcaattgttaagtccacagttacatctcatgttaactctgattcttctttg |
1591542 |
T |
|
| Q |
118 |
gctcctggtt |
127 |
Q |
| |
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|||||||||| |
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|
| T |
1591543 |
gctcctggtt |
1591552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 17373898 - 17374173
Alignment:
| Q |
97 |
gttaactctgattcttctttagctcctggtt---tacttaggatgcactttcat----gattgttttgtccaaggttgtgacgcttctgttctcgttgcc |
189 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||||||| | | ||||| ||||||||||||||||| || |||||| || ||||| |
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| T |
17373898 |
gttaactctgattcttctttggctcctggtgatctacttaggatgcacttccttccacgattgctttgtccaaggttgtgatgcatctgttgtcattgcc |
17373997 |
T |
|
| Q |
190 |
ggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgatgatgctaagacaaaactcgaggctgcatgtcccggtg |
289 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17373998 |
ggctcgggctccgagaaaacagcatttccaaaccttggtttaagaggttttgaagtaattgatgatgctaagacaaaactcgagactgcatgtcccggtg |
17374097 |
T |
|
| Q |
290 |
ttgtctcttgtgctgatatcgttgctcttgctgctcgtgattccgttgttctggtaattaactaacttaactatat |
365 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
17374098 |
ttgtctcttgtgctgatattgttacccttgctgctcgtgattccgttgttttggtaattatctaacttaactatat |
17374173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 17374194 - 17374275
Alignment:
| Q |
351 |
ctaacttaactatatattgtacaaatgatagtaaaggagatactgcta-aaaatgttgaattaattagttacacaaatataaattt |
435 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||| |
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| T |
17374194 |
ctaacttaactatatattgaacaaatgatagtaaaggagacactgctacaaaatgt----taaattagttacacaaatataaattt |
17374275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 17373855 - 17373896
Alignment:
| Q |
19 |
caagggacacgtgtaggattctattcaagtacatgttctcaa |
60 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
17373855 |
caagggaaacgtgtaggattctattcaaatacatgttctcaa |
17373896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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