View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11973_low_2 (Length: 441)
Name: NF11973_low_2
Description: NF11973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11973_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 45669191 - 45668766
Alignment:
| Q |
18 |
agatgggtactcaacgagattcagacctatatgggttatgattttgtaagcaatcaagtactctactgaaacatcacatagtatttattattgaaataaa |
117 |
Q |
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| T |
45669191 |
agatgggtactcaacgagattcagacctatatgggttatgattttgtaagcaatcaagtactctactgaaacatcacata---tttattattgtaataaa |
45669095 |
T |
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| Q |
118 |
aattcaaatttcataatgaaatgctcataatatatacaccttccttaatgtctttcacgtgtgaatattcttctacacttttttcttcctttgtctgctt |
217 |
Q |
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| T |
45669094 |
aattcaaatttcataatgaaatgctcataatatatacaccttccttattgtctttcacgtgtgaatattcttctacacttttttcttcctttgtctgctt |
45668995 |
T |
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| Q |
218 |
cacaattgcacaatgtataatcatgcctcggtttggaattgtgaaaaacagaatatttcttcatcaatacctttcataactagtatttgcaattttatcc |
317 |
Q |
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| T |
45668994 |
cacaattgcacaatgtataatcatgcctcggtttggaattgtgaaaaacagaatatttcttcatcaatacctttcacaactagtatttgcaattttatcc |
45668895 |
T |
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| Q |
318 |
ttataaaaattgcatttgtgtgagagt-----tgagagtttgcaattttctcctctaaaaaatatagaagtttgagtaataaaataattttttgagattt |
412 |
Q |
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| T |
45668894 |
ttataaaaattgcatttgtgtgagagttgagttgagagtttgcaattttctcctctaaaaaatatagaagtttgagtaataaaataattttttgagattg |
45668795 |
T |
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| Q |
413 |
tgaatttaagtatgaaatggtgaaccaca |
441 |
Q |
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| T |
45668794 |
tgaatttaagtatgaaagggtgaaccaca |
45668766 |
T |
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