View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11974_high_2 (Length: 735)
Name: NF11974_high_2
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11974_high_2 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 43202135 - 43201685
Alignment:
| Q |
7 |
gtagcatagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaaga---tgagagcagcgatatgttttt |
103 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43202135 |
gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacgtgaatcccttcaagaagaagaagaagatgagagcagcgatatgttttt |
43202036 |
T |
|
| Q |
104 |
ctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgaca |
203 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
43202035 |
ctttgaagagtcctcacataaacaattagctgaataaatgagagtcactaagtttaaaataaaggacggctatgatttggtgtcaacaaatccattgaca |
43201936 |
T |
|
| Q |
204 |
ccgagtgacccaaactcttaatatattaacacaaacatactcaatttattggtattgataatatatagatttagaagtacagaaagagtgccaaaaaggt |
303 |
Q |
| |
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|||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43201935 |
ccgaatgatcctaactcctaatatattaacacaaacatactcaatttattggtattgataatatatatatttagaagtacagaaagagtgccaaaaaggt |
43201836 |
T |
|
| Q |
304 |
agacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagaaagtcaatcacatttaagaactc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43201835 |
agacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagaaagtcaatcacatttaagaactc |
43201736 |
T |
|
| Q |
404 |
acacgtgagtaactactcattgagctggcatttatacctcacaaacaaata |
454 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43201735 |
acacgtgagtaactactcattgagctggcatttatacctcacaaacaaata |
43201685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 469 - 712
Target Start/End: Complemental strand, 43201615 - 43201372
Alignment:
| Q |
469 |
aattagctagtagtcaatatttatagttcagaaaatcctcgtacaagaaaaacaattatctttttcttctaaatattactctttaatttctcacacgctt |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43201615 |
aattagctagtagtcaatatttatagttcagaaaatcctcgtacaagaaaaacaattatctttttcttctaaataccactctttaatttctcacacgctt |
43201516 |
T |
|
| Q |
569 |
tctttctaggtatattacagcacaacaatcctattcttgtctattgaatactatttcttttactttnnnnnnntaggtggacaattatgtcctttgtata |
668 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43201515 |
tctttctaggtatattacagcacaacaatcctattcttgtctattgaatactatttcttttactttaaaaaaataggtggacaattatgtcctttgtata |
43201416 |
T |
|
| Q |
669 |
taccttgccttttaagtacacttatattttctaccaatattttc |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43201415 |
taccttgccttttaagtacacttatattttctaccaatattttc |
43201372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 28592605 - 28592792
Alignment:
| Q |
14 |
agggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcg------atatgtttttcttt |
107 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||| |
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| T |
28592605 |
agggatgatcgattgtgtaatttgtctg----aagaacataaacatgagtcacttcaagaagaaga---tgagagcaacgtggtatatatgcttttcttt |
28592697 |
T |
|
| Q |
108 |
gaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtc-aacgaatccattga |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||| |||||||||||||| |
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|
| T |
28592698 |
gaagagtccccacgtgaacaattagctgaataaatgagagccattaagattaaaataaatgacggttatgatttggtgtcaaacgaatccattga |
28592792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 13477189 - 13477077
Alignment:
| Q |
93 |
gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||| | || || |||||||||||| || |
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| T |
13477189 |
gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga |
13477090 |
T |
|
| Q |
193 |
atccattgacacc |
205 |
Q |
| |
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|| | |||||||| |
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| T |
13477089 |
attcgttgacacc |
13477077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 51469206 - 51469311
Alignment:
| Q |
99 |
tttttctttgaagagtccccacatgaacaa-ttagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatcca |
197 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || || ||||||||| |||||||||||||| ||| |||| | ||||| ||||||||||||||||||| |
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|
| T |
51469206 |
tttttctttgaagagttcccacgtgaacaagttcgc-gaataaatgtgagccattaagattaaaacaaagaatggctaagatttggtgtcaacgaatccg |
51469304 |
T |
|
| Q |
198 |
ttgacac |
204 |
Q |
| |
|
||||||| |
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|
| T |
51469305 |
ttgacac |
51469311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 6e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 48717507 - 48717312
Alignment:
| Q |
7 |
gtagcatagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctt |
106 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
48717507 |
gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaaga---tgagaacagcgatatgtttttctt |
48717411 |
T |
|
| Q |
107 |
tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | |||||||||||||| ||||||||||| |
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|
| T |
48717410 |
tcaagagtccccacatgaacaattagctgaataaatgagagccactaagattaaaatgaaggacggctatgagttggtgtcaacgaacccattgacacc |
48717312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 48718172 - 48718224
Alignment:
| Q |
153 |
aagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc |
205 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
48718172 |
aagattaaaataaacgacggctatgatttggtgtcaacggatccattgacacc |
48718224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 14753938 - 14754086
Alignment:
| Q |
58 |
atgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat |
157 |
Q |
| |
|
|||||| ||||||||||||||| || ||| |||| |||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||| |
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|
| T |
14753938 |
atgagtgccttcaagaagaagatga-gagggcag---tatgtttttctttgaagagtccccacgtgaacaaattcgtgaataaatgtgagccattaagat |
14754033 |
T |
|
| Q |
158 |
tgaaataaaggacggctataatttggtgtcaacgaatccattgacaccgagtg |
210 |
Q |
| |
|
| ||| |||| ||||||| |||| |||||||| ||||| |||||||| |||| |
|
|
| T |
14754034 |
taaaacaaagaacggctaggatttagtgtcaacaaatccgttgacacctagtg |
14754086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 3043374 - 3043273
Alignment:
| Q |
93 |
gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||| | || || |||||||||||| || |
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|
| T |
3043374 |
gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga |
3043275 |
T |
|
| Q |
193 |
at |
194 |
Q |
| |
|
|| |
|
|
| T |
3043274 |
at |
3043273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 148523 - 148442
Alignment:
| Q |
75 |
gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat |
157 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| |
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|
| T |
148523 |
gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacctgaacaatcaagtgaataaatgtgagccattaagat |
148442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 12919734 - 12919653
Alignment:
| Q |
75 |
gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat |
157 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| | || ||||| |||||||||| || |||||||||| |
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|
| T |
12919734 |
gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacgttaataattaattgaataaatgtgaaccattaagat |
12919653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 25084659 - 25084536
Alignment:
| Q |
72 |
gaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacg |
171 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| ||| | |||||| | | |||||||| | ||||||||||| ||| |||| | | |
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|
| T |
25084659 |
gaagaagaagatgagagt-gtgatatgtttttctttgaagagtccacaccttaacaatcaagtaaataaatgtgggccattaagatcaaaacaaagaatg |
25084561 |
T |
|
| Q |
172 |
gctataatttggtgtcaacgaatcc |
196 |
Q |
| |
|
| || |||||||||||||| |||| |
|
|
| T |
25084560 |
gttaggatttggtgtcaacggatcc |
25084536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 33470511 - 33470400
Alignment:
| Q |
94 |
atatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaa |
193 |
Q |
| |
|
|||||||||||||| ||||||| ||| | |||||||| |||||||||| ||||||||||||| |||||||| | || | ||||||||||||| || |
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|
| T |
33470511 |
atatgtttttctttaaagagtctccatgttaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggtttggatttggtgtcaacaaa |
33470412 |
T |
|
| Q |
194 |
tccattgacacc |
205 |
Q |
| |
|
| | |||||||| |
|
|
| T |
33470411 |
ttcgttgacacc |
33470400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 45632541 - 45632494
Alignment:
| Q |
134 |
tgaataaatgagagccattaagattgaaataaaggacggctataattt |
181 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
45632541 |
tgaataaatgatagccactaagattaaaataaaggacggctatgattt |
45632494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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