View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11974_high_5 (Length: 528)
Name: NF11974_high_5
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11974_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 30768376 - 30768878
Alignment:
| Q |
18 |
acatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccgg |
117 |
Q |
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| T |
30768376 |
acatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccgg |
30768475 |
T |
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| Q |
118 |
tggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
30768476 |
tggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtt |
30768575 |
T |
|
| Q |
218 |
tctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataa |
317 |
Q |
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| T |
30768576 |
tctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataa |
30768675 |
T |
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| Q |
318 |
agagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaaatc |
417 |
Q |
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| T |
30768676 |
agagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaagtc |
30768775 |
T |
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| Q |
418 |
ctacttctttttaggacaaaagttacgaattgttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatctct |
517 |
Q |
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| T |
30768776 |
ctacttctttttaggacaaaagttatgtatttttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatatct |
30768875 |
T |
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| Q |
518 |
gct |
520 |
Q |
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| T |
30768876 |
gct |
30768878 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
312 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
362 |
Q |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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