View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11974_low_1 (Length: 759)

Name: NF11974_low_1
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11974_low_1
NF11974_low_1
[»] scaffold0328 (2 HSPs)
scaffold0328 (18-759)||(9784-10537)
scaffold0328 (375-444)||(10563-10632)
[»] scaffold0002 (1 HSPs)
scaffold0002 (488-745)||(379517-379774)
[»] scaffold0009 (3 HSPs)
scaffold0009 (24-178)||(257286-257440)
scaffold0009 (23-274)||(214808-215059)
scaffold0009 (18-237)||(22386-22605)
[»] chr3 (10 HSPs)
chr3 (480-754)||(17143774-17144048)
chr3 (486-660)||(17485655-17485829)
chr3 (593-739)||(13932754-13932900)
chr3 (481-660)||(431342-431521)
chr3 (634-744)||(17396536-17396647)
chr3 (652-730)||(20119160-20119239)
chr3 (646-755)||(14860290-14860400)
chr3 (480-576)||(1770795-1770891)
chr3 (488-573)||(12516158-12516243)
chr3 (505-575)||(8122964-8123034)
[»] chr2 (19 HSPs)
chr2 (503-759)||(15390633-15390889)
chr2 (481-655)||(20120238-20120412)
chr2 (635-736)||(19919225-19919326)
chr2 (477-575)||(45714966-45715064)
chr2 (481-660)||(30638449-30638628)
chr2 (480-575)||(45258177-45258272)
chr2 (488-577)||(18135840-18135929)
chr2 (480-562)||(12168956-12169039)
chr2 (480-562)||(15825138-15825220)
chr2 (483-661)||(36267383-36267561)
chr2 (480-562)||(18770296-18770380)
chr2 (481-573)||(10923191-10923283)
chr2 (480-577)||(3586332-3586429)
chr2 (480-572)||(12127688-12127780)
chr2 (484-563)||(24499772-24499851)
chr2 (511-562)||(28426178-28426229)
chr2 (704-759)||(28426352-28426407)
chr2 (480-558)||(27846544-27846622)
chr2 (488-562)||(29137885-29137959)
[»] chr7 (13 HSPs)
chr7 (488-759)||(16987125-16987396)
chr7 (634-754)||(5925653-5925774)
chr7 (480-575)||(12644756-12644851)
chr7 (488-660)||(9135394-9135566)
chr7 (527-572)||(26562891-26562936)
chr7 (516-571)||(2226618-2226673)
chr7 (480-575)||(21161213-21161307)
chr7 (488-562)||(34854227-34854301)
chr7 (502-562)||(5925522-5925582)
chr7 (480-660)||(9867964-9868144)
chr7 (648-723)||(9573598-9573673)
chr7 (488-575)||(13292156-13292243)
chr7 (480-562)||(39879371-39879453)
[»] scaffold0074 (1 HSPs)
scaffold0074 (480-741)||(35058-35319)
[»] chr1 (17 HSPs)
chr1 (482-736)||(26977551-26977804)
chr1 (480-730)||(22414591-22414841)
chr1 (480-759)||(52565366-52565646)
chr1 (488-573)||(4601520-4601605)
chr1 (492-655)||(16299611-16299773)
chr1 (480-555)||(5671761-5671836)
chr1 (480-592)||(12177340-12177452)
chr1 (477-575)||(16050365-16050463)
chr1 (502-562)||(21098892-21098952)
chr1 (480-575)||(16030366-16030461)
chr1 (529-574)||(16522747-16522792)
chr1 (511-580)||(18246109-18246178)
chr1 (635-703)||(5459867-5459935)
chr1 (480-556)||(33101532-33101608)
chr1 (502-565)||(3590808-3590871)
chr1 (594-660)||(29217656-29217722)
chr1 (480-558)||(34273075-34273153)
[»] scaffold0140 (1 HSPs)
scaffold0140 (480-649)||(6195-6364)
[»] chr4 (7 HSPs)
chr4 (480-660)||(12683672-12683851)
chr4 (652-744)||(18463601-18463694)
chr4 (482-608)||(19643640-19643766)
chr4 (646-737)||(15789890-15789981)
chr4 (480-536)||(19809711-19809767)
chr4 (502-560)||(14602062-14602120)
chr4 (480-562)||(29157086-29157168)
[»] chr8 (17 HSPs)
chr8 (480-660)||(21416624-21416804)
chr8 (634-759)||(14667017-14667143)
chr8 (626-740)||(26917048-26917161)
chr8 (635-737)||(13754588-13754690)
chr8 (641-754)||(24576769-24576883)
chr8 (480-558)||(13764977-13765055)
chr8 (480-558)||(30477629-30477707)
chr8 (480-557)||(3459509-3459586)
chr8 (634-759)||(20402148-20402273)
chr8 (480-574)||(13754730-13754824)
chr8 (477-562)||(15058019-15058104)
chr8 (22-103)||(26913767-26913848)
chr8 (502-562)||(4565440-4565500)
chr8 (481-575)||(23269217-23269311)
chr8 (480-574)||(26916923-26917017)
chr8 (594-655)||(7220434-7220495)
chr8 (672-737)||(13593832-13593897)
[»] chr6 (20 HSPs)
chr6 (642-741)||(13823564-13823664)
chr6 (634-740)||(18566463-18566569)
chr6 (508-617)||(12449636-12449745)
chr6 (634-735)||(19305275-19305376)
chr6 (480-740)||(19331705-19331965)
chr6 (488-608)||(34064133-34064253)
chr6 (477-562)||(34187283-34187368)
chr6 (480-580)||(3404887-3404987)
chr6 (480-575)||(18147277-18147372)
chr6 (508-575)||(22497351-22497418)
chr6 (480-558)||(14080472-14080549)
chr6 (485-575)||(30680963-30681053)
chr6 (488-562)||(31295568-31295642)
chr6 (480-562)||(33596845-33596927)
chr6 (478-574)||(9292042-9292138)
chr6 (512-562)||(14184600-14184650)
chr6 (477-555)||(34573016-34573094)
chr6 (480-565)||(689882-689967)
chr6 (486-575)||(11087473-11087562)
chr6 (672-736)||(30654418-30654485)
[»] scaffold0068 (2 HSPs)
scaffold0068 (634-745)||(49102-49212)
scaffold0068 (634-745)||(62550-62660)
[»] chr5 (14 HSPs)
chr5 (48-259)||(22962331-22962539)
chr5 (30-103)||(21351357-21351430)
chr5 (18-103)||(22933708-22933793)
chr5 (18-103)||(22981499-22981584)
chr5 (635-717)||(20025133-20025215)
chr5 (480-580)||(22903059-22903159)
chr5 (480-574)||(27083263-27083356)
chr5 (125-237)||(21264846-21264958)
chr5 (503-562)||(26348127-26348186)
chr5 (529-575)||(16621179-16621225)
chr5 (125-179)||(23021543-23021597)
chr5 (490-564)||(26163617-26163691)
chr5 (22-103)||(21212448-21212529)
chr5 (27-72)||(21250913-21250958)
[»] scaffold0291 (1 HSPs)
scaffold0291 (480-740)||(8602-8861)
[»] scaffold0505 (2 HSPs)
scaffold0505 (635-759)||(7693-7817)
scaffold0505 (480-575)||(7856-7951)
[»] scaffold0360 (1 HSPs)
scaffold0360 (480-558)||(13910-13988)
[»] scaffold0101 (1 HSPs)
scaffold0101 (497-575)||(10760-10838)
[»] scaffold0013 (1 HSPs)
scaffold0013 (502-562)||(4471-4531)
[»] scaffold0438 (1 HSPs)
scaffold0438 (632-715)||(4214-4297)
[»] scaffold0005 (1 HSPs)
scaffold0005 (502-560)||(215258-215316)
[»] scaffold0479 (1 HSPs)
scaffold0479 (597-654)||(4932-4989)
[»] scaffold0174 (1 HSPs)
scaffold0174 (505-658)||(29326-29479)


Alignment Details
Target: scaffold0328 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 759
Target Start/End: Original strand, 9784 - 10537
Alignment:
Q  18 atattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9784 atattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgg 9883  T
Q  118 gaggatatataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacatttgctgctgcagattacttgaaagcacacctttcaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9884 gaggatatataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacaattgctgctgcagattacttgaaagcacacctttcaag 9983  T
Q  218 caagatacaagggaaatcattcttggataattttaggatccataaggagattcatgattaattttagttcataggtttgaactataccttaatgccctat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9984 caagatacaagggaaatcattcttggataattttaggatccataaggagattcatgattaattttagttcataggtttgaactataccttaatgccctat 10083  T
Q  318 atatgaaatagcatcaccatgtaggctttggtcatgtcctgtcagacaattgtgttttaatttgttttcatcacttaaaaattttataataattgtatgt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  10084 atatgaaatagcatcaccatgtaggctttggtcatgtcctgtcagacaattgtgttttaatttgttttcatcactttaaaaatttataataattgtatgt 10183  T
Q  418 tgtccatgaaaaataagtaaattttgcaaacttttttcttaaatttctatatctcttga------------accacactttctacacactatttcccagt 505  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |            ||  ||||||||| ||| | |||| |||     
T  10184 tgtccatgaaaaataagtaaattttgcaaactgttttcttaaatttctatatctgttcaatatcacttttcacaccactttctaaacaatctttcgcagc 10283  T
Q  506 ttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattaccagaagtcgttactgtca 605  Q
    ||| ||| |||||| ||| | ||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||| ||| |||||| ||||    
T  10284 ttccttattcacttaagcgttggagtgctaatgtgcctacaggcacctttcgttccatcgcgacggctcaacaccgtagtaccataagccgttaccgtca 10383  T
Q  606 caccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtcca 705  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10384 caccggagcattaaccgctgccgtttccactcatccgttctcaccgaacatatcatttgacgctataaggaggggatcgttcactaaccaccacggtcca 10483  T
Q  706 actatcctccaccgtaaccattttctgttacgcgcatctctgccgtaactgttt 759  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||    
T  10484 actatcctccaccataaccattttctgttacgcgcatctccgccataaccgttt 10537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 10563 - 10632
Alignment:
Q  375 taatttgttttcatcacttaaaaattttataataattgtatgttgtccatgaaaaataagtaaattttgc 444  Q
    ||||||||||||| | ||| ||||  ||| |||||||| ||||||||| |||||||||||||||||||||    
T  10563 taatttgttttcacctctttaaaaaattaaaataattgcatgttgtccctgaaaaataagtaaattttgc 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 488 - 745
Target Start/End: Complemental strand, 379774 - 379517
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattac 587  Q
    |||||||| |||| ||||| ||||||| |||| ||  ||  |||||||| ||||||| |  |||||||||||||| || ||||||||| |  ||   |||    
T  379774 tacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgcgaagactcatcgtcgccgtac 379675  T
Q  588 cagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttc 687  Q
    | ||||  ||||| ||||||||||||||||  | ||| | ||| ||||||| ||||||| ||||||||||||||||| || || ||||||||||||||||    
T  379674 cggaagctgttacagtcacaccggagcattctctgccactgttgccactcaaccgttcttaccggacatatcatttggcgctagaaggaggggatcgttc 379575  T
Q  688 gctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatctc 745  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  379574 gctaaccgccacggtccaacgatcctccaccgtaaccattttctgttacgcgcatctc 379517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 257440 - 257286
Alignment:
Q  24 accaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgggaggat 123  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||| | ||  |||||||   |||| ||||||||||||    
T  257440 accaatggaatttaccgaagcattgaacatcgagcaacagtgaattcagagaaggagagaatctctgttgcagcatttcacgctcctcatatgggaggat 257341  T
Q  124 atataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaac 178  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  257340 atataggtccaacacccagccttgttactcctcaaagtcctgcattattcaaaac 257286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 215059 - 214808
Alignment:
Q  23 gaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgggagga 122  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||||| | ||||||||| || ||| | ||| |||||||   |||| |||||||  ||    
T  215059 gaccaatggaatttaccgaagcattgaacatcgagcaacggtgaattcggagaaggagagaatctctgttgctgcatttcactctcctcatatgggcaga 214960  T
Q  123 tatataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacatttgctgctgcagattacttgaaagcacacctttcaagcaaga 222  Q
    |||||||| ||||||||||||||||| ||||||  |||||||||||| ||||||||| | ||| || |||||| | | || | | ||||| |||||||||    
T  214959 tatataggtccaacacccagccttgttactcctcgaagtcctgcattattcaaaacagtggctacttcagatttcctcaagggataccttgcaagcaaga 214860  T
Q  223 tacaagggaaatcattcttggataattttaggatccataaggagattcatga 274  Q
    || | ||||| |||| |||||||  | |||||||| | || |||||||||||    
T  214859 taaaggggaagtcatacttggatgttcttaggatcaaaaacgagattcatga 214808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 22605 - 22386
Alignment:
Q  18 atattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgg 117  Q
    |||||||| |||||||||||  |||| |||||||||||||| || || ||||||| ||| | |||||| || || ||| ||||||| |  ||| | |||     
T  22605 atattgacaaatggaatttatcgaagcattgaacatcgagctacggttaattcagagaaagcgaggatttccattgctgcatttcacagacctcagatga 22506  T
Q  118 gaggatatataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacatttgctgctgcagattacttgaaagcacacctttcaag 217  Q
    |   |  |||||| |||||||  |  ||||| ||||||||||| |||||||||||||||||| || |||  | ||||||||  ||||||  | ||||| |    
T  22505 gcaaagttataggtccaacacaaaaacttgttactcctgaaaggcctgcattgttcaaaacaattactgtagaagattactacaaagcattcttttcacg 22406  T
Q  218 caagatacaagggaaatcat 237  Q
    |||| |||||||||||||||    
T  22405 caagctacaagggaaatcat 22386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 480 - 754
Target Start/End: Original strand, 17143774 - 17144048
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||| ||||||| |||||||| |||||||||||| |||||||   ||||||||| | ||| ||||||||||||| ||    
T  17143774 acactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgcctaagaacacctttcatcccaccgtgaagactcaaaac 17143873  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggg 679  Q
    |    |||| ||||| ||| | |||||||||||| |||| ||||| |||||  ||||||||| |||||||  || | || |||||    || ||||||||    
T  17143874 ctccataccggaagttgttgccgtcacaccggagaattatccgccaccgttgacactcatccattctcacaagatagataatttggaactagaaggaggg 17143973  T
Q  680 gatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatctctgccgtaac 754  Q
    ||||||||||||||| |||  ||  ||||||||||||||||||||  ||||||||||||| | ||| ||||||||    
T  17143974 gatcgttcgctaaccgccatagtttaactatcctccaccgtaaccgctttctgttacgcggacctccgccgtaac 17144048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 486 - 660
Target Start/End: Original strand, 17485655 - 17485829
Alignment:
Q  486 tctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtatt 585  Q
    ||||||||||  ||| || || ||||||| |||||||| | || ||||||||||||| ||||||||||||||||||| || |||||||||||| |    |    
T  17485655 tctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccaccgcgaagactcaacagctccgt 17485754  T
Q  586 accagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
    | || |||  ||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  17485755 atcataagctgttaccgtcacactggagcattatccgccgccgttgccactcatccgttctcaccggacagatca 17485829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 593 - 739
Target Start/End: Complemental strand, 13932900 - 13932754
Alignment:
Q  593 gtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaa 692  Q
    ||||||||  || ||||||||||||| ||||| ||||| ||| ||||  ||||||||  |||||||||||||||| || |||||||||||| ||||||||    
T  13932900 gtcgttaccatctcaccggagcattatccgccaccgttgccagtcatttgttctcactagacatatcatttgacgctagaaggaggggatcattcgctaa 13932801  T
Q  693 ccaccacggtccaactatcctccaccgtaaccattttctgttacgcg 739  Q
    || ||||  || ||| |||||||||||||||| |||| |||||||||    
T  13932800 ccgccacattctaacgatcctccaccgtaacctttttttgttacgcg 13932754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 660
Target Start/End: Original strand, 431342 - 431521
Alignment:
Q  481 cactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacacc 580  Q
    ||||||| || |||| |||| ||||| ||||| | |||||||| ||| |||||||| ||| ||  || |||||||| ||||| || ||||||||||||||    
T  431342 cactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaagactcaacacc 431441  T
Q  581 gtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
        |||| |||| |||||| |||| |||||||||||| | ||  ||||| |||||||||||||||||||||||||||||    
T  431442 agcctaccggaagccgttaccgtcaaaccggagcattatctgcaaccgttgccactcatccgttctcaccggacatatca 431521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 634 - 744
Target Start/End: Complemental strand, 17396647 - 17396536
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaa-ccaccacggtccaactatcctccaccgtaaccattttctg 732  Q
    ||||| ||||||||| |||||| |||||||| || || |||||||| |||||||||||| || || ||||| ||| ||| ||| | |||||| |||| ||    
T  17396647 actcaaccgttctcatcggacagatcatttggcgctagaaggagggaatcgttcgctaagccgcctcggtctaacgatcttccgctgtaaccgttttttg 17396548  T
Q  733 ttacgcgcatct 744  Q
    ||||||||||||    
T  17396547 ttacgcgcatct 17396536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 652 - 730
Target Start/End: Original strand, 20119160 - 20119239
Alignment:
Q  652 gacatatcatttgacgttataaggaggggatcgttcgct-aaccaccacggtccaactatcctccaccgtaaccattttc 730  Q
    ||||||||||||| ||||| ||||| |||||| |||||| |||||| | |||||||| |||||||||| |||||||||||    
T  20119160 gacatatcatttggcgttagaaggaagggatcattcgctaaaccacgatggtccaacgatcctccaccataaccattttc 20119239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 14860290 - 14860400
Alignment:
Q  646 tcaccggacatatcatttgacgttataaggaggggatcgttcgctaa-ccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatct 744  Q
    ||||||||||||||||||| |  || |||||| ||| ||||||  || || ||| |||||||| |||||||||||||||| |||| ||||| |||||||     
T  14860290 tcaccggacatatcatttggcactagaaggagaggaccgttcgtgaaaccgccatggtccaacgatcctccaccgtaaccgttttttgttatgcgcatcc 14860389  T
Q  745 ctgccgtaact 755  Q
    | |||||||||    
T  14860390 ccgccgtaact 14860400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 576
Target Start/End: Complemental strand, 1770891 - 1770795
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaa 576  Q
    |||||||||||||||| || | ||||| ||||||| |||||||| ||||||| ||||  ||| | |||||||||||| ||||| ||  |||||||||    
T  1770891 acactttctacacactcttcctcagttccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttccaccgcaaagactcaa 1770795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 573
Target Start/End: Complemental strand, 12516243 - 12516158
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagact 573  Q
    |||||| | |||| ||||| ||||||| |||||||| |||||||||||| ||| || ||| ||||||||||| || | ||||||||    
T  12516243 tacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcacctttcgtttcaccatgaagact 12516158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 8122964 - 8123034
Alignment:
Q  505 tttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||| |||||||| | |||||||||| |||||| || ||||||||| ||  | ||||||||||||    
T  8122964 tttcattactgacttgagcgttggagtgctaacgtgcctgcatacacctttcattttaccgtgaagactca 8123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 503 - 759
Target Start/End: Original strand, 15390633 - 15390889
Alignment:
Q  503 agtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattaccagaagtcgttactg 602  Q
    |||| ||| ||| |||||||| ||  |||||||| ||||| | || || |||||||||||||| ||||||||| | | |   | || |||| |||||| |    
T  15390633 agttccatcacttacttgagcgtcaaagtgctaacgtgccaataggcagctttcgttccatcgcgaagactcatcgctgccgtgccggaagccgttaccg 15390732  T
Q  603 tcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggt 702  Q
    ||||||  |||||||  | | | ||||| ||||||| ||||||||||| |||| |||||||| || || ||||||||||||||||||||||| || | ||    
T  15390733 tcacactagagcattctctggcaccgttgccactcaaccgttctcaccagacagatcatttggcgctagaaggaggggatcgttcgctaaccgcctcagt 15390832  T
Q  703 ccaactatcctccaccgtaaccattttctgttacgcgcatctctgccgtaactgttt 759  Q
    ||||  ||||||||| |||||  |||||||||||||||||||| |||||||||||||    
T  15390833 ccaaggatcctccactgtaacagttttctgttacgcgcatctccgccgtaactgttt 15390889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 481 - 655
Target Start/End: Complemental strand, 20120412 - 20120238
Alignment:
Q  481 cactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacacc 580  Q
    ||||||| ||||||| |||| ||||||||||||| |||||||  |||||||||||| |||||| |||||||||||||||||| |||||||| | ||||||    
T  20120412 cactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccgtgaagatttaacacc 20120313  T
Q  581 gtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggaca 655  Q
        | ||  ||| |||||| ||||||| |||| |||| ||||| ||||| ||||| ||  ||||||||||||||    
T  20120312 agcgtgccgaaagccgttaccgtcacactggagtattatccgccaccgttgccactaatttgttctcaccggaca 20120238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 635 - 736
Target Start/End: Original strand, 19919225 - 19919326
Alignment:
Q  635 ctcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgtt 734  Q
    ||||||| |||||||||||||||||||||  |  ||||||||||| |||||||||||||| ||| |||| ||| |||||||||| ||| | |||||||||    
T  19919225 ctcatccattctcaccggacatatcattttgctctataaggagggaatcgttcgctaaccgccaaggtctaacgatcctccaccataatcgttttctgtt 19919324  T
Q  735 ac 736  Q
    ||    
T  19919325 ac 19919326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 575
Target Start/End: Complemental strand, 45715064 - 45714966
Alignment:
Q  477 accacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||| |||||||| |||| ||||||||||||| |||||||| | |||||||||| |||||| ||  |||||||||||||| |  |||||||||    
T  45715064 accacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactca 45714966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 660
Target Start/End: Complemental strand, 30638628 - 30638449
Alignment:
Q  481 cactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacacc 580  Q
    ||||||| || |||| ||||  |||| ||||||| || ||||| ||| |||| ||| ||| ||  ||||| ||||| ||||| || || |||||||||||    
T  30638628 cactttccacgcactctttcttagttccattactgacatgagcgtcgaagtgttaacgtgtctgtagacatctttctttccaccgcgatgactcaacacc 30638529  T
Q  581 gtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
        ||||||||| | |||| |||||||| | |||||| ||||  ||||| |||||||||||||||||| ||||||||||    
T  30638528 accctaccagaagccattaccgtcacaccagtgcattatccgcaaccgttgccactcatccgttctcactggacatatca 30638449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 575
Target Start/End: Original strand, 45258177 - 45258272
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||| ||||| | ||||  |||||||||||| |||||||||| |||||| ||| |||||| |||||| ||||||||||| || |||||||||    
T  45258177 acactttcgacacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactca 45258272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 577
Target Start/End: Complemental strand, 18135929 - 18135840
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaac 577  Q
    |||||||| |||| ||||| ||||||| |||||||| || |||| |||| |||||||||| |||||||| | ||| ||||||||||||||    
T  18135929 tacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcacctttcatcccaccgtgaagactcaac 18135840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 12169039 - 12168956
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttga-gcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||||||||||| ||||  |||| ||||||| |||||| || | |||||| |||||||||| ||||||||||||||||||    
T  12169039 acactttctacacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttcca 12168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 15825220 - 15825138
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||||||||||| |||| ||||| ||||||  |||||||| ||  |||||||| |||||| ||||||| ||||||||||    
T  15825220 acactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttcca 15825138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 661
Target Start/End: Complemental strand, 36267561 - 36267383
Alignment:
Q  483 ctttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgt 582  Q
    ||||||||||||| |||| ||||||||||||| |||||||| | |||||| |||  ||| | ||| |||||||| |||||  | ||||||||| |  |||    
T  36267561 ctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcgtcgt 36267462  T
Q  583 attaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcat 661  Q
      | | |||| |||| |||||| ||||| |||||||  |||| || || | |||||||| | ||||||||||| |||||    
T  36267461 catgctagaaatcgtcactgtcgcaccgaagcattattcgccaccattactactcatccatcctcaccggacagatcat 36267383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 18770380 - 18770296
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgccta--cagacacctttcgttcca 562  Q
    |||||||||||||||| |||| || |||||||||| |||||||| || ||||||||| |||||||   || ||||||||||||||    
T  18770380 acactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcctatgtaggcacctttcgttcca 18770296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 10923191 - 10923283
Alignment:
Q  481 cactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagact 573  Q
    ||||||||||||||| |||   |||| ||| ||| |||||||  |||||||| ||| ||||||||| ||||||||||||||| || |||||||    
T  10923191 cactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgttccaccgcgaagact 10923283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 577
Target Start/End: Complemental strand, 3586429 - 3586332
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaac 577  Q
    ||||||||||| |||| |||| ||||| ||||||| |||||||| ||||||| |||| |||||  ||  |||||||| ||||| ||  ||||||||||    
T  3586429 acactttctactcactttttctcagttccattactgacttgagcgtcggagtcctaacgtgccggcatgcacctttcattccaccgcaaagactcaac 3586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 572
Target Start/End: Original strand, 12127688 - 12127780
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagac 572  Q
    |||||||||||||||   |||  |||||||||||| |||||||| | |||||||||| |||||| |||  ||||||||| ||| || ||||||    
T  12127688 acactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccgcgaagac 12127780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 24499851 - 24499772
Alignment:
Q  484 tttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccat 563  Q
    |||||||||||| |||| || || ||||||| |||||||| | |||||||||| || |||| || |||||||||| ||||    
T  24499851 tttctacacactctttctcatttccattactgacttgagcgttggagtgctaacgttcctagaggcacctttcgtcccat 24499772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 28426178 - 28426229
Alignment:
Q  511 tactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||| |||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  28426178 tactgacttgatcatcggagtgctaatgtgcctgcaggcacctttcgttcca 28426229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 759
Target Start/End: Original strand, 28426352 - 28426407
Alignment:
Q  704 caactatcctccaccgtaaccattttctgttacgcgcatctctgccgtaactgttt 759  Q
    |||| |||||||||||||||  |||||||||||| ||||||| |||||||| ||||    
T  28426352 caacgatcctccaccgtaactgttttctgttacgtgcatctccgccgtaaccgttt 28426407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 558
Target Start/End: Original strand, 27846544 - 27846622
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||| | | |||||||||| |||||| ||| ||| ||||||    
T  27846544 acactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgt 27846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 29137959 - 29137885
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||| |||| ||||| ||||| | |||||||| |||| ||||||| || ||| |||||| |||||||||||    
T  29137959 tacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttcca 29137885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 488 - 759
Target Start/End: Original strand, 16987125 - 16987396
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattac 587  Q
    |||||||| |||| || || |||||||  ||||||  || ||||||||| |||||  ||  |||||||||||||| || |||||||||   |||   |||    
T  16987125 tacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcgaagactcattgccgccgtac 16987224  T
Q  588 cagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttc 687  Q
    |||||| |||||  ||||||||||||||||  | |||  |||| ||| ||| |||||||||||||||| ||| |||| || || |||||||||||| ||     
T  16987225 cagaagccgttagcgtcacaccggagcattctctgccctcgttaccattcaaccgttctcaccggacagatcgtttggcgctagaaggaggggatcatta 16987324  T
Q  688 gctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatctctgccgtaactgttt 759  Q
     |||||| ||||| |||||| ||||||||||  ||||||||||||||||||||||||| || ||||| ||||    
T  16987325 actaacctccacgttccaacgatcctccaccaaaaccattttctgttacgcgcatctccgctgtaaccgttt 16987396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 634 - 754
Target Start/End: Original strand, 5925653 - 5925774
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaacca-ccacggtccaactatcctccaccgtaaccattttctg 732  Q
    ||||| ||||||||||||||||||||||||   | || |||||||||||| | |||||| |  |||||||||||| |||||||||||||||| ||||  |    
T  5925653 actcaaccgttctcaccggacatatcatttagtgctagaaggaggggatcatccgctaaactgccacggtccaacgatcctccaccgtaaccgtttttag 5925752  T
Q  733 ttacgcgcatctctgccgtaac 754  Q
    |||||| ||| || ||||||||    
T  5925753 ttacgcacatatccgccgtaac 5925774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 12644851 - 12644756
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||| ||||||| |||| ||||| ||||||| || ||||| ||||||||||||  ||||| ||  |||||||||||||| ||||||||||||    
T  12644851 acactttccacacactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactca 12644756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 660
Target Start/End: Original strand, 9135394 - 9135566
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattac 587  Q
    |||||||| |||| || || ||||||| |||||||| |  ||||||||| ||||||| |  |||||||||||||| |||||||||| |||||||   |||    
T  9135394 tacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccgtgaagacttaacaccgccgtac 9135493  T
Q  588 cagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
      |||  |||||| ||||||||| |||||||  |||| | | | ||||||||  ||||||||| |||| ||||    
T  9135494 tggaaaccgttaccgtcacaccgaagcattattcgccactgctgccactcatttgttctcaccagacagatca 9135566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 26562936 - 26562891
Alignment:
Q  527 ggagtgctaatgtgcctacagacacctttcgttccatcgtgaagac 572  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||    
T  26562936 ggagtgctaatgtgcctgcagacacctttcgttccaccgtgaagac 26562891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 2226673 - 2226618
Alignment:
Q  516 acttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaaga 571  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||| ||||||||    
T  2226673 acttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaaga 2226618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 21161307 - 21161213
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||||||||  ||||  || | ||||||| |||||||| | |||||||||| |||||| |||||| ||||||||||| || |||||||||    
T  21161307 acactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttccaccgcgaagactca 21161213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 34854301 - 34854227
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||| |||| ||||||||||||| |||||||| || ||||||||| ||| || || ||||| |||||||||    
T  34854301 tacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttcca 34854227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 5925522 - 5925582
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||| ||||||| |||||| | | |||||||||| |||||| ||||||||||||||||||    
T  5925522 cagttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttcca 5925582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 660
Target Start/End: Original strand, 9867964 - 9868144
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||| ||| || | ||||| ||||||| |||||||| || ||||||||| || ||| ||  |||||||||| ||| || ||||||||  | |    
T  9867964 acactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcccaccgcgaagactcgtcgc 9868063  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
    ||   | |  |||| |||||| |||||| || ||||||| | | || |||| |||||||| | ||||||||||||| ||||    
T  9868064 cgccgttctggaagccgttaccgtcacatcgaagcattatctgtcgtcgttgccactcattcattctcaccggacagatca 9868144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 723
Target Start/End: Original strand, 9573598 - 9573673
Alignment:
Q  648 accggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaac 723  Q
    ||||||||||||||||| || || |||||||| ||||||||| |||  ||||| || ||| |||||||||| ||||    
T  9573598 accggacatatcatttggcgctagaaggagggcatcgttcgcgaactgccacgatctaacgatcctccaccataac 9573673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 575
Target Start/End: Original strand, 13292156 - 13292243
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||| |||  ||||||||||||| |||||||| |  ||||||||| || ||| |||||||||||| ||||| |  |||||||||    
T  13292156 tacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaagactca 13292243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 39879453 - 39879371
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||||| |||||||| |||| ||||||||||||| |||||||| |   |||| ||| ||| || ||| ||||||||||||||    
T  39879453 acactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttcca 39879371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 480 - 741
Target Start/End: Complemental strand, 35319 - 35058
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||| ||||||| |||| ||||| | ||||| |||||||  || ||||||||| |||||| ||  ||| ||||||| ||    ||||||||||| |    
T  35319 acactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgcactacgaagactcaacgc 35220  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggg 679  Q
    ||   |||| |||| ||||||  |||||||||||| ||| |  || | ||| || |||||||||||||| |||||| || |||||  | || ||||||||    
T  35219 cgccgtaccggaagccgttaccatcacaccggagctttatctaccactgttgcctctcatccgttctcatcggacagatgatttggtgctagaaggaggg 35120  T
Q  680 gatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgca 741  Q
    |||| ||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||    
T  35119 gatccttcgctaaccaacacggtctaacgatcctccaccgtaactattttctgttacgcgca 35058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 482 - 736
Target Start/End: Complemental strand, 26977804 - 26977551
Alignment:
Q  482 actttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccg 581  Q
    |||||||||||||| |||| | ||| ||||||| |||||||| | |||||||||| |||||| ||| |||||||||||||| ||  |||| ||| |||||    
T  26977804 actttctacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatcaccg 26977705  T
Q  582 tattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggagggga 681  Q
       |||| |||  ||||||||||| |||  |||| |  ||||| ||||| |||||||| | ||||  ||||||| |||| ||| || || ||||||||||    
T  26977704 ctgtaccggaaaccgttactgtcataccatagcactttccgccaccgttgccactcattcattctagccggacagatcaattggcgctagaaggagggga 26977605  T
Q  682 tcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttac 736  Q
    |||||||| ||||  | ||||| ||| || ||||||||||||| |||| ||||||    
T  26977604 tcgttcgc-aaccgtcgcggtctaacgattctccaccgtaaccgttttatgttac 26977551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 730
Target Start/End: Complemental strand, 22414841 - 22414591
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||  ||||||||||||| |||||||| || ||||||||| |||||| | | |||||||||||||| ||  |||||||| |      
T  22414841 acactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgcaaagactcatcgt 22414742  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggg 679  Q
    |    |||  |||  |||   ||||||| ||||||||||   ||| | ||| |||||||||| | ||||||||| | ||||||||  | || || ||| |    
T  22414741 caccgtactggaaaccgtcgttgtcacaacggagcattatttgccactgttgccactcatccatcctcaccggaaagatcatttggagctagaatgagag 22414642  T
Q  680 gatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttc 730  Q
    |||||||| |||||||||| |||| ||| ||||||||||||||||||||||    
T  22414641 gatcgttcactaaccaccatggtctaacgatcctccaccgtaaccattttc 22414591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 480 - 759
Target Start/End: Complemental strand, 52565646 - 52565366
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    ||||||||| | |||| |||  ||||| | ||||| |||||||| || ||||||||| ||| || ||| ||||||||||||||||  ||| ||||| | |    
T  52565646 acactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttccatcacgaaaactcatcgc 52565547  T
Q  580 cgtattaccagaagtcgttactgtcacac-cggagcattaaccgccgccgtttccactcatccgttctcaccggacata-tcatttgacgttataaggag 677  Q
    |    |||| ||||| ||||| ||||||| |||||||||  | || | | || ||| ||||||||||||||| || |   ||||||| || || ||||||    
T  52565546 caccataccggaagttgttaccgtcacactcggagcattctctgctgtcattgccattcatccgttctcaccagaaaaggtcatttggcgctagaaggag 52565447  T
Q  678 gggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatctctgccgtaactgttt 759  Q
    || |||||||||||||| |||||||||||| || ||||| ||||||  |||| |||||||||||||||   |||||||||||    
T  52565446 gg-atcgttcgctaacctccacggtccaacaatactccaacgtaactgttttatgttacgcgcatctccatcgtaactgttt 52565366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 488 - 573
Target Start/End: Original strand, 4601520 - 4601605
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagact 573  Q
    |||||| |||||| ||||||||||||| |||||||| |||||||||||| |||||| ||| |||||||||||||| || |||||||    
T  4601520 tacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagact 4601605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 492 - 655
Target Start/End: Original strand, 16299611 - 16299773
Alignment:
Q  492 cactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattaccaga 591  Q
    |||| |||| ||||||||||||| |||||| | ||||||||||||||||| | ||||||| |||||||||| ||  |||||||| | |||   || | ||    
T  16299611 cactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccg-caagactcatcgccgccgtatcgga 16299709  T
Q  592 agtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggaca 655  Q
    ||||||||| || |||||||||||||  |  |||| ||| ||||||| | ||||||||||||||    
T  16299710 agtcgttacggtaacaccggagcattctctaccgctgttgccactcaactgttctcaccggaca 16299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 555
Target Start/End: Complemental strand, 5671836 - 5671761
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacaccttt 555  Q
    |||||||||||||||| |||| ||||| ||||||| |||||||| | |||||||||| ||||||||| ||||||||    
T  5671836 acactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaaacaccttt 5671761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 592
Target Start/End: Complemental strand, 12177452 - 12177340
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||| ||||||| |||||||  |||||||||||| |||| |  || |||||||||||||| || ||  ||||||| |    
T  12177452 acactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgcgattactcaacgc 12177353  T
Q  580 cgtattaccagaa 592  Q
    |||  ||||||||    
T  12177352 cgtcgtaccagaa 12177340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 575
Target Start/End: Complemental strand, 16050463 - 16050365
Alignment:
Q  477 accacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    ||||||||||||||||||| |||| ||||| ||| | | |||||||| | |||||||||| |||||| |||| |||||||  |||| || |||||||||    
T  16050463 accacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccgcgaagactca 16050365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 21098892 - 21098952
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||| ||||||| |||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  21098892 cagttccattactgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttcca 21098952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 16030461 - 16030366
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||||||||| ||   ||||| ||||||| |||||||| |  || || ||| |||||| |||||||||||| ||||| ||||||||||||    
T  16030461 acactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccgtgaagactca 16030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 16522792 - 16522747
Alignment:
Q  529 agtgctaatgtgcctacagacacctttcgttccatcgtgaagactc 574  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||    
T  16522792 agtgctaacgtgccttcagacacctttcgttccatagtgaagactc 16522747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 18246178 - 18246109
Alignment:
Q  511 tactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacacc 580  Q
    ||||||||||||| | |||||| ||| |||| |||||||||||||||||||| ||  |||||||| ||||    
T  18246178 tactcacttgagcgttggagtgttaacgtgcttacagacacctttcgttccaccgccaagactcatcacc 18246109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 703
Target Start/End: Original strand, 5459867 - 5459935
Alignment:
Q  635 ctcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtc 703  Q
    ||||||| | ||||||||| | |||||||| ||  | |||||||||||| |||||||||||||||||||    
T  5459867 ctcatccatcctcaccggatagatcatttggcgccagaaggaggggatccttcgctaaccaccacggtc 5459935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 556
Target Start/End: Original strand, 33101532 - 33101608
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttc 556  Q
    |||||||||||||||| |||| ||||| ||||||  |||||||| | |||||||||| |||||| ||  ||||||||    
T  33101532 acactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttc 33101608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 3590871 - 3590808
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcg 565  Q
    ||||| ||||||| |||||| | |||||||||||| |||||| ||  |||||||||||||||||    
T  3590871 cagttccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttccatcg 3590808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 660
Target Start/End: Original strand, 29217656 - 29217722
Alignment:
Q  594 tcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
    ||||||| ||||||||||||||||  | ||||||||| ||| ||| | ||||||| |||||||||||    
T  29217656 tcgttaccgtcacaccggagcattctctgccgccgttgccattcaactgttctcatcggacatatca 29217722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 34273153 - 34273075
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||||||||||||| |||| ||||| | ||||| |||||||| | |||||||||| |||| | |||  |||||||||    
T  34273153 acactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgt 34273075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 480 - 649
Target Start/End: Complemental strand, 6364 - 6195
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||| |||||| || |||||||| ||||||  |   |||||||||      
T  6364 acactttctacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgcctgcaaacaccttttgttccactgcagagactcaacgt 6265  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcac 649  Q
     |   ||||  |||||||||| |||||||| |||||||| ||| | ||||| ||||||||||||||||||    
T  6264 tgccgtaccgaaagtcgttaccgtcacaccagagcattatccgtcaccgttgccactcatccgttctcac 6195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 480 - 660
Target Start/End: Complemental strand, 12683851 - 12683672
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||||||||||| |||||||| | |||||||||| |||||| ||| |||||||||||||| ||  |||||||| |      
T  12683851 acactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcgt 12683752  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
    |||  || | |||  ||| || ||||||| ||| ||||| ||||| || || |||||||||| | ||||||||||||||||    
T  12683751 cgtcgta-cggaaaccgtcaccgtcacactggaacattatccgccacctttgccactcatccatcctcaccggacatatca 12683672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 652 - 744
Target Start/End: Complemental strand, 18463694 - 18463601
Alignment:
Q  652 gacatatcatttgacgttataaggaggggatcgttcgctaa-ccaccacggtccaactatcctccaccgtaaccattttctgttacgcgcatct 744  Q
    ||||||||||||| || || |||||||||||||||  |||| |||||| |||||||| |||||||||||||||||||||| |||| || |||||    
T  18463694 gacatatcatttggcgctagaaggaggggatcgttttctaaaccaccatggtccaacgatcctccaccgtaaccattttcagttatgcacatct 18463601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 608
Target Start/End: Complemental strand, 19643766 - 19643640
Alignment:
Q  482 actttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccg 581  Q
    |||||||||||||| |||| ||||| ||||||| |||| ||| ||||| || ||| || ||| | | |||||| |||||||||  ||||||||||| |||    
T  19643766 actttctacacactctttctcagttccattactgacttaagcgtcggattggtaacgtacctgcgggcaccttccgttccatcacgaagactcaacgccg 19643667  T
Q  582 tattaccagaagtcgttactgtcacac 608  Q
       |||| |||||||||| ||||||||    
T  19643666 ccgtaccggaagtcgttattgtcacac 19643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 646 - 737
Target Start/End: Complemental strand, 15789981 - 15789890
Alignment:
Q  646 tcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacg 737  Q
    ||||||||||  ||||||| || || ||||| |||||||||||||||||||||| ||| ||| |||| ||||| ||||  |||||| |||||    
T  15789981 tcaccggacaagtcatttggcgctagaaggaagggatcgttcgctaaccaccacagtctaacaatccaccaccataactgttttctcttacg 15789890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 19809767 - 19809711
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaa 536  Q
    |||||||||||||||| ||||  |||||||||||| |||||||| | ||||||||||    
T  19809767 acactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaa 19809711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 14602062 - 14602120
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttc 560  Q
    ||||||||||||| |||||||| | ||| |||||| |||||| |||||| |||||||||    
T  14602062 cagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 14602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 29157168 - 29157086
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||| ||||||||| |||| ||||| ||||||| |||||||| | ||||||| || ||| || ||  ||||||||||||||    
T  29157168 acacttactacacactttttctcagttccattactaacttgagcgttggagtgcaaacgtgtctgcatgcacctttcgttcca 29157086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 480 - 660
Target Start/End: Complemental strand, 21416804 - 21416624
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||| | || | ||||||||||  | ||||||| ||| ||||||| |    
T  21416804 acactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacaccttcagatccatcgcgaatactcaacgc 21416705  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatca 660  Q
    ||   |||   ||| | |||| ||||||||||||||||| | ||| ||||   |||||||||||| ||| |||| ||||||    
T  21416704 cgccgtactgaaagccattaccgtcacaccggagcattatctgccaccgtagtcactcatccgttttcatcggatatatca 21416624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 634 - 759
Target Start/End: Original strand, 14667017 - 14667143
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgct-aaccaccacggtccaactatcctccaccgtaaccattttctg 732  Q
    ||||| ||||||||||||| || |||||||| || || ||||||||||||||||||| |||| || | ||||||| ||||||||  |||||| ||||  |    
T  14667017 actcagccgttctcaccgggcagatcatttggcgctagaaggaggggatcgttcgctaaaccgcctcagtccaacgatcctccaatgtaaccttttttcg 14667116  T
Q  733 ttacgcgcatctctgccgtaactgttt 759  Q
    |||| ||||||||||||||||| ||||    
T  14667117 ttacacgcatctctgccgtaacagttt 14667143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 626 - 740
Target Start/End: Original strand, 26917048 - 26917161
Alignment:
Q  626 ccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaacca 725  Q
    ||||| || ||||||| | |||||||||||||||||||| || || || ||||| ||||||||||||||||||| ||| ||| ||||||||| |||||||    
T  26917048 ccgttgcctctcatccatcctcaccggacatatcatttggcgctagaatgaggg-atcgttcgctaaccaccaccgtctaacgatcctccactgtaacca 26917146  T
Q  726 ttttctgttacgcgc 740  Q
    |||| ||||| ||||    
T  26917147 ttttatgttatgcgc 26917161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 737
Target Start/End: Complemental strand, 13754690 - 13754588
Alignment:
Q  635 ctcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgtt 734  Q
    ||||||| | ||||||||| | ||||||||  | || ||||||||||||||||||||||| |||||||| ||| ||| |||| ||||||| |||||||||    
T  13754690 ctcatccatcctcaccggaaaaatcatttggtgctagaaggaggggatcgttcgctaaccgccacggtctaacgatcatccatcgtaaccgttttctgtt 13754591  T
Q  735 acg 737  Q
    |||    
T  13754590 acg 13754588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 641 - 754
Target Start/End: Original strand, 24576769 - 24576883
Alignment:
Q  641 cgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaa-ccaccacggtccaactatcctccaccgtaaccattttctgttacgcg 739  Q
    |||||||||  ||||||||||||  || | |||||||||||| ||||||||| ||||| | ||||||| | ||||||||||||| |||||||||||||||    
T  24576769 cgttctcacatgacatatcattttgcgctgtaaggaggggattgttcgctaaaccaccgcagtccaacaaacctccaccgtaactattttctgttacgcg 24576868  T
Q  740 catctctgccgtaac 754  Q
     ||||| ||| ||||    
T  24576869 tatctccgccataac 24576883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 13765055 - 13764977
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||||||||||||| |||| |||||||||||||||||||| | | |||||  ||| |||||| ||||||||||||||    
T  13765055 acactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgt 13764977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 30477707 - 30477629
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||||||||||||| |||| ||||||| ||||| |||||||| | |||||||||| |||| | |||||| |||||||    
T  30477707 acactttctacacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgt 30477629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 3459509 - 3459586
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcg 557  Q
    |||||||||||||||| || | ||||| ||||||| ||||||||  ||||||||||| |||||| ||| |||||||||    
T  3459509 acactttctacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcg 3459586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 634 - 759
Target Start/End: Complemental strand, 20402273 - 20402148
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgt 733  Q
    ||||| || ||||||| ||||| ||||||||| | || || ||||||||| |||||||||| ||||||||||| |||  |||| | | ||| ||||| |     
T  20402273 actcaaccattctcacaggacagatcatttgaagctagaatgaggggatcattcgctaaccgccacggtccaaatatgttccatcatgaccgttttcaga 20402174  T
Q  734 tacgcgcatctctgccgtaactgttt 759  Q
    |||||||||||| | |||||| ||||    
T  20402173 tacgcgcatctccgtcgtaaccgttt 20402148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 574
Target Start/End: Complemental strand, 13754824 - 13754730
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactc 574  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||   | |||| ||| |||||  ||| |||||||||| |||| | ||||||||    
T  13754824 acactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttcgtcccattgcgaagactc 13754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 562
Target Start/End: Complemental strand, 15058104 - 15058019
Alignment:
Q  477 accacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||||||||||||||| | |||| || |||||||||| ||||| || | | |||||||| |||||| ||  ||||||||||||||    
T  15058104 accacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttcca 15058019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 26913848 - 26913767
Alignment:
Q  22 tgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca 103  Q
    |||| ||||| |||||  ||||||||||||||||||||||| | || |||| |||||||||||| || || || ||||||||    
T  26913848 tgacgaatggtatttatcgaagtattgaacatcgagcaacaattaactcagagaaggagaggatttcgattgccacatttca 26913767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 4565440 - 4565500
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||||||||||| ||||||   ||||||||||||  ||||| ||||||||||||||||||    
T  4565440 cagtttcattactaacttgattgtcggagtgctaacatgcctgcagacacctttcgttcca 4565500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 575
Target Start/End: Complemental strand, 23269311 - 23269217
Alignment:
Q  481 cactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    ||||||||||||||| |||  ||||| ||||||| |||| ||  | ||||||||||  |||||  ||||||||||||||||| ||  ||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactca 23269217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 574
Target Start/End: Original strand, 26916923 - 26917017
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactc 574  Q
    |||||||||||||||| | || ||||| ||||||| |||||||| |  | | ||||| ||||||| |  ||||||||||||||||  ||||||||    
T  26916923 acactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaagactc 26917017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 655
Target Start/End: Complemental strand, 7220495 - 7220434
Alignment:
Q  594 tcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggaca 655  Q
    ||||||| |||  |||||| ||||| | ||| ||||| ||||||||||||||||||||||||    
T  7220495 tcgttaccgtcgtaccggaacattatcagccaccgttgccactcatccgttctcaccggaca 7220434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 737
Target Start/End: Original strand, 13593832 - 13593897
Alignment:
Q  672 aaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacg 737  Q
    ||||||||||||||||||||||| | |||||| ||| ||| |||||| ||||  ||| ||||||||    
T  13593832 aaggaggggatcgttcgctaaccgcaacggtctaacgatcatccaccataactgtttactgttacg 13593897  T

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Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 642 - 741
Target Start/End: Original strand, 13823564 - 13823664
Alignment:
Q  642 gttctcaccggacatatcatttgacgttataaggaggggatcgttcgct-aaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgc 740  Q
    ||||||||||||||||||||||| || ||  ||||||||||||||| || ||||||| ||||||||| |||||||||||||||  |||||| ||||||||    
T  13823564 gttctcaccggacatatcatttggcgctagtaggaggggatcgttcactaaaccacctcggtccaacgatcctccaccgtaactgttttcttttacgcgc 13823663  T
Q  741 a 741  Q
    |    
T  13823664 a 13823664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 634 - 740
Target Start/End: Complemental strand, 18566569 - 18566463
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgt 733  Q
    ||||||||||||||| ||||||||||||||| || || ||| ||||||||||||||||| | |||| ||||||  ||||||| | ||||   ||||||||    
T  18566569 actcatccgttctcatcggacatatcatttggcgctagaagaaggggatcgttcgctaaacgccacagtccaataatcctcccctgtaattgttttctgt 18566470  T
Q  734 tacgcgc 740  Q
    |||||||    
T  18566469 tacgcgc 18566463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 508 - 617
Target Start/End: Original strand, 12449636 - 12449745
Alignment:
Q  508 cattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattaccagaagtcgttactgtcaca 607  Q
    ||||||| |||||||| || ||||||||| ||||||||||||||||||||| ||| |  ||||||||| |||||   | ||  |||||||||||||||||    
T  12449636 cattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatcaccgcggtgccgaaagtcgttactgtcaca 12449735  T
Q  608 ccggagcatt 617  Q
    || |||||||    
T  12449736 ccagagcatt 12449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 634 - 735
Target Start/End: Complemental strand, 19305376 - 19305275
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgt 733  Q
    |||||||| | |||||  |||||||||||||||| || |||||||||||||||||||||| ||||||||  ||| |||||||| ||||  | ||||||||    
T  19305376 actcatccatcctcactagacatatcatttgacgctagaaggaggggatcgttcgctaactaccacggtttaacaatcctccatcgtactcgttttctgt 19305277  T
Q  734 ta 735  Q
    ||    
T  19305276 ta 19305275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 480 - 740
Target Start/End: Original strand, 19331705 - 19331965
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||| || || ||||  |||| ||||||| |||| ||| ||||||| |||| || ||| ||  |||||||||||||| || ||||||||  |||    
T  19331705 acactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaagactcgtcac 19331804  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggg 679  Q
     |   |||  |||   || ||||||||||| ||||| |  | ||| ||||| | |||||| | | ||||||||| | |  ||||| || || || |||||    
T  19331805 agccatacaggaaactgtaactgtcacaccagagcactttctgccaccgttgcaactcattcatcctcaccggagaaaaaatttggcgctagaatgaggg 19331904  T
Q  680 gatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgc 740  Q
    |||||||| |||||| |||||||| ||| |||||||||||||||| ||||| |||||||||    
T  19331905 gatcgttcactaacctccacggtctaacaatcctccaccgtaaccgttttcagttacgcgc 19331965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 608
Target Start/End: Complemental strand, 34064253 - 34064133
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattac 587  Q
    |||||||| ||||  |||||||||||| |||||| | ||  |||| ||| |||||| || ||||||||||||| | ||||||||||||  |||||  |||    
T  34064253 tacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcctgcacacacctttcgttctaccgtgaagactcattaccgtcatac 34064154  T
Q  588 cagaagtcgttactgtcacac 608  Q
    || |||||||||| |||||||    
T  34064153 caaaagtcgttaccgtcacac 34064133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 477 - 562
Target Start/End: Complemental strand, 34187368 - 34187283
Alignment:
Q  477 accacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||||| |||||||| |||| ||||| ||||||| |||||||  | || ||||||| ||| || ||||||||||||||||||    
T  34187368 accacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttcca 34187283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 580
Target Start/End: Original strand, 3404887 - 3404987
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||| ||||||| |||| ||  |  ||||| |||||||||||||||||| ||||||  ||| | ||||||||| |||    
T  3404887 acactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacagacacatttcgtctcattgcgaagactcatcac 3404986  T
Q  580 c 580  Q
    |    
T  3404987 c 3404987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 18147372 - 18147277
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||||||||| |||| | ||| ||||| | |||||||| | |||||| ||| || ||||||| ||||||||||| || || |||||||||    
T  18147372 acactttctacacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcctacaggcacctttcgtttcaccgagaagactca 18147277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 508 - 575
Target Start/End: Original strand, 22497351 - 22497418
Alignment:
Q  508 cattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    ||||||| |||||||| |||||||||||| ||| || ||  ||||||||||||||||| |||||||||    
T  22497351 cattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttccatcgcgaagactca 22497418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 14080549 - 14080472
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||| ||||||||| |||| ||||| ||||||| |||||||| || ||||||||||||||||  || ||||||||||    
T  14080549 acacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgt 14080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 575
Target Start/End: Complemental strand, 30681053 - 30680963
Alignment:
Q  485 ttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||| || |||  ||||||||||||| |||||||| | |||||||||| |||  | |||||||||||||| ||| || |||||||||    
T  30681053 ttctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactca 30680963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 562
Target Start/End: Original strand, 31295568 - 31295642
Alignment:
Q  488 tacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||| |||| ||||||||||||| |||||||| ||| ||||||||  ||||| ||| || |||||||||||    
T  31295568 tacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgttcca 31295642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 33596927 - 33596845
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||||||||||| ||||  |||||||||||| | |||||| |  ||||| |||||||||| |||  |||||||||||||    
T  33596927 acactttctacacactttttcttagtttcattactgagttgagcgttagagtgttaatgtgcctgcaggtacctttcgttcca 33596845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 574
Target Start/End: Original strand, 9292042 - 9292138
Alignment:
Q  478 ccacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactc 574  Q
    ||||||||| |||| |||||||| ||||| || |||| |||||||| |  | ||||||| |||| | ||| |||||||||||||| ||| |||||||    
T  9292042 ccacactttttacatactatttctcagttccaatactgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccaccgtaaagactc 9292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 562
Target Start/End: Original strand, 14184600 - 14184650
Alignment:
Q  512 actcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||||||||| | ||||||||||||||||||| ||  ||||||||||||||    
T  14184600 actcacttgatcgtcggagtgctaatgtgcctgcaatcacctttcgttcca 14184650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 34573016 - 34573094
Alignment:
Q  477 accacactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacaccttt 555  Q
    ||||||||||||||||||| ||||  ||||  |||||| |||||||| | |||||  ||||||| || |||||||||||    
T  34573016 accacactttctacacactttttcttagttctattactaacttgagcgttggagtattaatgtgtctgcagacaccttt 34573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 689882 - 689967
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcg 565  Q
    ||||||| |||||||  |||| ||||| ||||||| |||||||| | | ||||||||||| ||| || ||||||||| ||| ||||    
T  689882 acactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacacctttcattctatcg 689967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 575
Target Start/End: Complemental strand, 11087562 - 11087473
Alignment:
Q  486 tctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||| ||| |||| ||||| ||||||| |||| ||  ||  |||||||||||| || |||||| ||||||||||| || |||||||||    
T  11087562 tctacatactctttctcagttacattactgacttaagggtcaaagtgctaatgtgtctgcagacagctttcgttccaccgcgaagactca 11087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 736
Target Start/End: Complemental strand, 30654485 - 30654418
Alignment:
Q  672 aaggaggggatcgttcgctaaccaccacggtccaactat---cctccaccgtaaccattttctgttac 736  Q
    ||||||||| ||||||||||||| ||||  |||||| ||   ||||||| ||||||||||||||||||    
T  30654485 aaggagggggtcgttcgctaaccgccacaatccaacgatattcctccactgtaaccattttctgttac 30654418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 634 - 745
Target Start/End: Original strand, 49102 - 49212
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgt 733  Q
    ||||||| ||||||| ||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||  ||||||||| | |||| ||| |||    
T  49102 actcatctgttctcatcggacatgtcatttggcgctagaaggaggggatcgttcgctaaccgccacggtccaacattcctccaccatgacca-tttatgt 49200  T
Q  734 tacgcgcatctc 745  Q
     |||||||||||    
T  49201 cacgcgcatctc 49212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 634 - 745
Target Start/End: Original strand, 62550 - 62660
Alignment:
Q  634 actcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgt 733  Q
    ||||||| ||||||| ||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||  ||||||||| | |||| ||| |||    
T  62550 actcatctgttctcatcggacatgtcatttggcgctagaaggaggggatcgttcgctaaccgccacggtccaacattcctccaccatgacca-tttatgt 62648  T
Q  734 tacgcgcatctc 745  Q
     |||||||||||    
T  62649 cacgcgcatctc 62660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 22962539 - 22962331
Alignment:
Q  48 gaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttcaaaatccttatatgggaggatatataggcccaacacccagccttg 147  Q
    |||||| | |||||||| |||||||  ||||||||||| ||| | | | ||||||| | |||| ||| ||| |   ||||| | ||| ||||||| ||||    
T  22962539 gaacatagggcaacagtaaattcagaaaaggagaggatctctgttggtgcatttcacagtcctcataggggtg---atataagtccagcacccagtcttg 22962443  T
Q  148 tgactcctgaaagtcctgcattgttcaaaacatttgctgctgcagattacttgaaagcacacctttcaagcaagatacaagggaaatcattcttggataa 247  Q
    | |||||||||||||||||||| || |||||  || ||  |||||||||| | || | | ||||||||||||||||| | |||||||||| |||||||      
T  22962442 ttactcctgaaagtcctgcattatttaaaaccatttctattgcagattacgtcaatggatacctttcaagcaagataaatgggaaatcatacttggatgg 22962343  T
Q  248 ttttaggatcca 259  Q
    | ||||||||||    
T  22962342 tgttaggatcca 22962331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 21351357 - 21351430
Alignment:
Q  30 ggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca 103  Q
    ||||||||| |||| |||||||||||||||||| | |||||| |||| ||||||||||| || |||||||||||    
T  21351357 ggaatttaccgaagcattgaacatcgagcaacaatcaattcaatgaatgagaggatatcaattgctacatttca 21351430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 22933708 - 22933793
Alignment:
Q  18 atattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca 103  Q
    ||||| || |||||||||||| |||| ||||| ||||||| || ||||||||||  ||||||||||||||| || |||||||||||    
T  22933708 atatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttca 22933793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 22981584 - 22981499
Alignment:
Q  18 atattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca 103  Q
    ||||| ||||||||||||||| |||| ||||| ||| ||| |||||| ||||||  ||||||||||||||| || |||||||||||    
T  22981584 atattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagaggatatccattgctacatttca 22981499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 635 - 717
Target Start/End: Complemental strand, 20025215 - 20025133
Alignment:
Q  635 ctcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccac 717  Q
    ||||||| | |||||| ||||||||||||||||||  ||| | |||||| |||||||||| |||||||| ||| |||||||||    
T  20025215 ctcatccatcctcaccagacatatcatttgacgtttgaagaaagggatcattcgctaaccgccacggtctaacaatcctccac 20025133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 580
Target Start/End: Complemental strand, 22903159 - 22903059
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||| ||||| ||||||| |||||||| | | ||||||||  |||||||  | ||||||||||||| || ||| ||||| |||    
T  22903159 acactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccgcgaaaactcatcac 22903060  T
Q  580 c 580  Q
    |    
T  22903059 c 22903059  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 574
Target Start/End: Original strand, 27083263 - 27083356
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactc 574  Q
    |||||||||||||||| |||| ||||||| ||||| |||||||  | |||||||||| ||| || ||||||| |||||||| | || ||||||||    
T  27083263 acactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcagacacatttcgttctaccgcgaagactc 27083356  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 21264846 - 21264958
Alignment:
Q  125 tataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaacatttgctgctgcagattacttgaaagcacacctttcaagcaagata 224  Q
    |||||| |||||||  || ||||| |||| |||||| |||||||||||||||||| || | |  | ||||||||  ||||||  | ||||| ||||| ||    
T  21264846 tataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttacagtggaagattactacaaagcattcttttcacgcaagcta 21264945  T
Q  225 caagggaaatcat 237  Q
    |||||||||||||    
T  21264946 caagggaaatcat 21264958  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 562
Target Start/End: Original strand, 26348127 - 26348186
Alignment:
Q  503 agtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    |||| ||||| | |||||||| | |||||||||| |||||| ||||||||||||||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttcca 26348186  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 16621225 - 16621179
Alignment:
Q  529 agtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||| ||| ||||||||| ||||||||||||||| ||||||||||||    
T  16621225 agtgttaacgtgcctacatacacctttcgttccaccgtgaagactca 16621179  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 23021597 - 23021543
Alignment:
Q  125 tataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaaca 179  Q
    |||||| |||||||| || ||||| || |||||||| ||||||||||||||||||    
T  23021597 tataggtccaacaccaagacttgttacccctgaaagacctgcattgttcaaaaca 23021543  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 564
Target Start/End: Complemental strand, 26163691 - 26163617
Alignment:
Q  490 cacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatc 564  Q
    |||||| ||||  ||||||||| || |||||||| | ||||||||||||||| | ||  ||||||||||||||||    
T  26163691 cacactctttcttagtttcatttctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttccatc 26163617  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 21212448 - 21212529
Alignment:
Q  22 tgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca 103  Q
    |||| ||||| |||||  ||||||||||||||||||||||  | || |||| |||||||||||| || || || ||||||||    
T  21212448 tgacgaatggtatttatcgaagtattgaacatcgagcaacgattaactcagagaaggagaggatttccattgccacatttca 21212529  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 21250913 - 21250958
Alignment:
Q  27 aatggaatttacagaagtattgaacatcgagcaacagtgaattcag 72  Q
    |||||||| ||| |||| |||||||||||||||||||| |||||||    
T  21250913 aatggaatataccgaagcattgaacatcgagcaacagttaattcag 21250958  T

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Target: scaffold0291 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 480 - 740
Target Start/End: Original strand, 8602 - 8861
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacac 579  Q
    |||||||||||||||| |||  ||||||||||||| |||||||| ||| |||||||| ||| || || ||||||||  ||||| ||  |||||||||| |    
T  8602 acactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtg-ctgcaaacaccttttattccaccgcaaagactcaacgc 8700  T
Q  580 cgtattaccagaagtcgttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatatcatttgacgttataaggaggg 679  Q
    ||   |||  |||   |||||||||||| |||||||||| ||||| |||||  ||||||||  | |||| | || | |||||||  |  || |||||||     
T  8701 cgccgtactggaaactgttactgtcacagcggagcattatccgccaccgttgtcactcatctatcctcatcagatagatcatttatcactagaaggagga 8800  T
Q  680 gatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgttacgcgc 740  Q
    ||||||||| | | | |||||||| ||  |||||||| ||||| | |||||||||| ||||    
T  8801 gatcgttcgttgatcgccacggtctaatgatcctccatcgtaatcgttttctgttatgcgc 8861  T

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Target: scaffold0505 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 635 - 759
Target Start/End: Complemental strand, 7817 - 7693
Alignment:
Q  635 ctcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctccaccgtaaccattttctgtt 734  Q
    ||||||| | ||||| ||||| |||||||| || || || ||||||||||||| |||||| |||| ||| ||| ||||||||| |||||| |||||| ||    
T  7817 ctcatccatcctcactggacagatcatttggcgctagaaagaggggatcgttctctaacctccacagtctaacgatcctccactgtaaccgttttctatt 7718  T
Q  735 acgcgcatctctgccgtaactgttt 759  Q
    | ||||  ||| |||||||| ||||    
T  7717 atgcgctcctcggccgtaaccgttt 7693  T

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Target: scaffold0505; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 575
Target Start/End: Complemental strand, 7951 - 7856
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||||||||||||||| |||| || || ||||||| | |||||| |  ||||||||| |||||||||  |||||||| ||||| ||||||||||||    
T  7951 acactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccgtgaagactca 7856  T

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Target: scaffold0360 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 13988 - 13910
Alignment:
Q  480 acactttctacacactatttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgt 558  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||| ||||| |||| |||| | ||  ||||||||||    
T  13988 acactttctacacactctttctcagtttcattactgacttgagctttggagtactaacgtgcattcatgcacctttcgt 13910  T

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Target: scaffold0101 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 575
Target Start/End: Original strand, 10760 - 10838
Alignment:
Q  497 tttcccagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactca 575  Q
    |||| ||||| ||||||| |||||| | ||||||||||||  |||||||||||||||||| ||||| |  |||||||||    
T  10760 tttctcagttccattactgacttgaacgtcggagtgctaacatgcctacagacacctttcattccaccacgaagactca 10838  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 4471 - 4531
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttcca 562  Q
    ||||||||||| | |||||||| | |||||||||| |||| | ||||||||||||||||||    
T  4471 cagtttcattagtgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttcca 4531  T

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Target: scaffold0438 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 715
Target Start/End: Complemental strand, 4297 - 4214
Alignment:
Q  632 ccactcatccgttctcaccggacatatcatttgacgttataaggaggggatcgttcgctaaccaccacggtccaactatcctcc 715  Q
    ||||||| ||||||||||| |||| |||||||  || || |||||| ||||||||| |||||| ||||  |||||| |||||||    
T  4297 ccactcaaccgttctcaccagacagatcattttccgctagaaggagcggatcgttccctaaccgccacaatccaacgatcctcc 4214  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 215316 - 215258
Alignment:
Q  502 cagtttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttc 560  Q
    ||||||||||||| |||||||| | ||| |||||| |||||| |||||| |||||||||    
T  215316 cagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 215258  T

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Target: scaffold0479 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 654
Target Start/End: Complemental strand, 4989 - 4932
Alignment:
Q  597 ttactgtcacaccggagcattaaccgccgccgtttccactcatccgttctcaccggac 654  Q
    |||||||||||||||| ||||  | ||||||||| | ||||| |||||||||||||||    
T  4989 ttactgtcacaccggaacattctctgccgccgttgctactcaaccgttctcaccggac 4932  T

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Target: scaffold0174 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 658
Target Start/End: Original strand, 29326 - 29479
Alignment:
Q  505 tttcattactcacttgagcttcggagtgctaatgtgcctacagacacctttcgttccatcgtgaagactcaacaccgtattaccagaagtcgttactgtc 604  Q
    |||||||||| |||||||| | ||||||||||  || || ||  |||||||||||||| || ||||||||| || |||  ||||||||   || || |||    
T  29326 tttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttccaccgcgaagactcatcatcgtcgtaccagaaactgtcaccgtc 29425  T
Q  605 acaccggagcattaaccgccgccgtttccactcatccgttctcaccggacatat 658  Q
    | ||||||||| |   |||  ||||| |||| ||||| ||||||||| ||||||    
T  29426 ataccggagcactttgcgcaaccgttgccacgcatccattctcaccgaacatat 29479  T

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