View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11974_low_4 (Length: 540)

Name: NF11974_low_4
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11974_low_4
NF11974_low_4
[»] chr4 (17 HSPs)
chr4 (337-525)||(27487187-27487367)
chr4 (391-525)||(27480102-27480236)
chr4 (391-513)||(27505508-27505629)
chr4 (340-517)||(27525874-27526043)
chr4 (386-495)||(27523201-27523312)
chr4 (454-525)||(27502003-27502074)
chr4 (340-452)||(27513507-27513618)
chr4 (389-520)||(27474085-27474214)
chr4 (395-525)||(27460679-27460802)
chr4 (401-449)||(27476930-27476977)
chr4 (396-525)||(27469661-27469783)
chr4 (350-462)||(27500116-27500228)
chr4 (451-527)||(27513642-27513717)
chr4 (266-322)||(27523093-27523149)
chr4 (492-525)||(27476888-27476921)
chr4 (401-483)||(27467061-27467142)
chr4 (105-166)||(27522915-27522976)
[»] chr5 (1 HSPs)
chr5 (105-165)||(1753815-1753875)
[»] chr7 (1 HSPs)
chr7 (424-453)||(21476448-21476477)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 337 - 525
Target Start/End: Complemental strand, 27487367 - 27487187
Alignment:
Q  337 tagatgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaacca 436  Q
    |||||||||||| || |||||||||||||| ||  ||||||| ||||||       ||||||| ||||||||||||||||||||||||||||||||||||    
T  27487367 tagatgctttgatttacagatttatatttatggagaaatatagagaaaa-------taatgttaataaatttctcattgagatgaacatttttacaacca 27487275  T
Q  437 agtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatg 525  Q
    ||||||||||||| ||||||  || ||||||||||||||| ||  |||||||||||||||||| || | ||||||||||||||||||||    
T  27487274 agtatgataacaacaaaagattaaatcttttgaaggtgag-aataaaactgctacaaaaaatgggtcagatatctacgtcagtcctatg 27487187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 391 - 525
Target Start/End: Complemental strand, 27480236 - 27480102
Alignment:
Q  391 aataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgcta 490  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || | ||||||| ||||||||||||||| |||    
T  27480236 aataatgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatattttgaacgtgagaaactaaactacta 27480137  T
Q  491 caaaaaatgagtaaaatatctacgtcagtcctatg 525  Q
    |||||||||  | ||||| ||||||||||||||||    
T  27480136 caaaaaatggatcaaataactacgtcagtcctatg 27480102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 391 - 513
Target Start/End: Original strand, 27505508 - 27505629
Alignment:
Q  391 aataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgcta 490  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||| |||||||||||||||||||    
T  27505508 aatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaatgtgagaaactaaactgcta 27505607  T
Q  491 caaaaaatgagtaaaatatctac 513  Q
    | ||||||| || ||||||||||    
T  27505608 c-aaaaatgggtcaaatatctac 27505629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 340 - 517
Target Start/End: Original strand, 27525874 - 27526043
Alignment:
Q  340 atgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagt 439  Q
    ||||||||| |||||||||||||||||||| |||||||| |||     |||||| ||||| ||||||||||||||||| ||||| |||| | || |||||    
T  27525874 atgctttgattttcagatttatatttaagggaaaatatagaga-----agtaatgatgtt-ataaatttctcattgaggtgaactttttcataaacaagt 27525967  T
Q  440 atgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtca 517  Q
    || ||||||| |||||| ||| |||| | ||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  27525968 atcataacaacaaaagataaa-tcttctaaaggtgagaaactaaactgctac-aaaaatgggtcaaatatctacgtca 27526043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 386 - 495
Target Start/End: Original strand, 27523201 - 27523312
Alignment:
Q  386 acagtaataatgt--tgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaa 483  Q
    |||||||||||||  | ||||| ||||||||||| ||||||| ||||||| ||| ||||||||||| |||||| ||| ||||||||||||||||||||||    
T  27523201 acagtaataatgtgttaataaacttctcattgaggtgaacatatttacaagcaaatatgataacaacaaaagataaaatcttttgaaggtgagaaactaa 27523300  T
Q  484 actgctacaaaa 495  Q
    ||||||||||||    
T  27523301 actgctacaaaa 27523312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 525
Target Start/End: Original strand, 27502003 - 27502074
Alignment:
Q  454 agagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatg 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27502003 agagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgtgtcaaatatctacgtcagtcctatg 27502074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 340 - 452
Target Start/End: Original strand, 27513507 - 27513618
Alignment:
Q  340 atgctttgaatttcagatttatatttaaggcaaaatataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagt 439  Q
    ||||||||| |||||||||||||||||| |  ||||| | || || ||| |||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  27513507 atgctttgattttcagatttatatttaatgggaaatacacagtaacacaataataatgttaataaatttgtcattgagatgaac-tttttacaaccaagt 27513605  T
Q  440 atgataacaataa 452  Q
    |||||||||||||    
T  27513606 atgataacaataa 27513618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 389 - 520
Target Start/End: Complemental strand, 27474214 - 27474085
Alignment:
Q  389 gtaataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgc 488  Q
    |||||| |||| | |||||||||||| |||||||| |||| ||| |||||||||||||||| ||||| |||| |||||||||||| |||||||||| |||    
T  27474214 gtaatagtgttcaaaaatttctcattcagatgaacgtttt-acatccaagtatgataacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgc 27474116  T
Q  489 tacaaaaaatgagtaaaatatctacgtcagtc 520  Q
    |||||||| || || ||||||||| |||||||    
T  27474115 tacaaaaattg-gtcaaatatctatgtcagtc 27474085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 525
Target Start/End: Complemental strand, 27460802 - 27460679
Alignment:
Q  395 atgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaa 494  Q
    ||||| ||||||||||||||||||||||||||||||||||    ||||||||||| ||||||  || |||| ||||||  |||||||||||||||||  |    
T  27460802 atgttaataaatttctcattgagatgaacatttttacaac----tatgataacaacaaaagattaa-tcttctgaaggatagaaactaaactgctac--a 27460710  T
Q  495 aaatgagtaaaatatctacgtcagtcctatg 525  Q
    ||||| || ||||| ||||||||||||||||    
T  27460709 aaatgggtcaaataactacgtcagtcctatg 27460679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 27476977 - 27476930
Alignment:
Q  401 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaa 449  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27476977 ataaatttctcattgagatgaacatttttacaa-caagtatgataacaa 27476930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 525
Target Start/End: Complemental strand, 27469783 - 27469661
Alignment:
Q  396 tgttgataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaaactgctacaaaa 495  Q
    |||| |||||||||||||| |||| |||||||| ||| ||||     || |||| ||||| |||| ||||||||||||  ||||||||| ||||||| ||    
T  27469783 tgttaataaatttctcatttagatcaacatttt-acatccaa-----attacaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctaca-aa 27469691  T
Q  496 aatgagtaaaatatctacgtcagtcctatg 525  Q
    |||| || | ||||||||||||||||||||    
T  27469690 aatgggtcagatatctacgtcagtcctatg 27469661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 27500116 - 27500228
Alignment:
Q  350 tttcagatttatatttaaggcaaa-atataaagaaaaacagtaataatgttgataaatttctcattgagatgaacatttttacaaccaagtatgataaca 448  Q
    ||||| ||| |||||||||| ||| ||||| ||||| || |||||| |||| |||||||||||||| |||||||  ||| |||| ||||||||||| ||     
T  27500116 tttcatattgatatttaagggaaagatatagagaaatacggtaatagtgttaataaatttctcattcagatgaa-gtttatacatccaagtatgatcact 27500214  T
Q  449 ataaaagagaaact 462  Q
    | ||||||||||||    
T  27500215 acaaaagagaaact 27500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 527
Target Start/End: Original strand, 27513642 - 27513717
Alignment:
Q  451 aaaagagaaactcttttgaaggtgagaaactaaactgctacaaaaaatgagtaaaatatctacgtcagtcctatgct 527  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||| || || |||||||||||||| | |||||||    
T  27513642 aaaagagaaactcttttcaaggtgagaaactatactactac-aaaattgggtcaaatatctacgtcaatactatgct 27513717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 27523093 - 27523149
Alignment:
Q  266 attttataattgaaaaactgaatcttcaattatatcgtccagagattctaagctgaa 322  Q
    |||||||||||||| |||||||||||| |||||||| || ||||||||||| |||||    
T  27523093 attttataattgaacaactgaatcttccattatatcctctagagattctaaactgaa 27523149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 525
Target Start/End: Complemental strand, 27476921 - 27476888
Alignment:
Q  492 aaaaaatgagtaaaatatctacgtcagtcctatg 525  Q
    ||||||||||||||||||||||||||||||||||    
T  27476921 aaaaaatgagtaaaatatctacgtcagtcctatg 27476888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 27467142 - 27467061
Alignment:
Q  401 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaataaaagagaaactcttttgaaggtgagaaactaa 483  Q
    ||||||||||||||  ||||||  |||| ||| |||||||||||||||| ||||| | || || ||||||||| |||||||||    
T  27467142 ataaatttctcattccgatgaatgtttt-acatccaagtatgataacaacaaaagtggaaatcgtttgaaggttagaaactaa 27467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 27522915 - 27522976
Alignment:
Q  105 ttgataaattaaggaattgttattacgtttgaagaaaccatgtttttgttatctaaattcta 166  Q
    ||||||||||||  |||||||| || | ||  |||||||||||||||| |||||||||||||    
T  27522915 ttgataaattaaataattgttaatatgatttgagaaaccatgtttttgctatctaaattcta 27522976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 1753875 - 1753815
Alignment:
Q  105 ttgataaattaaggaattgttattacgtttgaagaaaccatgtttttgttatctaaattct 165  Q
    |||||||||||| |||||||| ||| | |||||||||||||||||||| ||||||||||||    
T  1753875 ttgataaattaaagaattgtttttatgattgaagaaaccatgtttttgctatctaaattct 1753815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 453
Target Start/End: Complemental strand, 21476477 - 21476448
Alignment:
Q  424 atttttacaaccaagtatgataacaataaa 453  Q
    ||||||||||||||||||||||||||||||    
T  21476477 atttttacaaccaagtatgataacaataaa 21476448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University