View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11974_low_6 (Length: 422)
Name: NF11974_low_6
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11974_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 14173631 - 14173801
Alignment:
| Q |
17 |
aaaatagtccttgaacaaattgaaagtcagaaactaattaaccttttcatagtacttcttatggtcattgatgcatcgaatcgtagtgtgcaatgccttg |
116 |
Q |
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| T |
14173631 |
aaaatagtccttgaacaaattgaaagtcagaaactaattaaccttttcatagtacttcttatggtcattgatgcatcgaatcgtagtgtgcaatgccttg |
14173730 |
T |
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| Q |
117 |
tgaaaatcatcagatgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtgaacatgg |
187 |
Q |
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| T |
14173731 |
tgaaaatcatcagatgcattatccaacagtttctgtaatcaaggacatgataagaatttttgtgaacatgg |
14173801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 238 - 412
Target Start/End: Original strand, 14173852 - 14174026
Alignment:
| Q |
238 |
caccttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcg |
337 |
Q |
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| T |
14173852 |
caccttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttca |
14173951 |
T |
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| Q |
338 |
tgatttccttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaatttcggatttatctca |
412 |
Q |
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| T |
14173952 |
tgatttccttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaatttcggatttatctca |
14174026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 413
Target Start/End: Original strand, 14166917 - 14167064
Alignment:
| Q |
266 |
tctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcgtgatttccttttttctctttgattgatt |
365 |
Q |
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| T |
14166917 |
tctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatccttatggcttcttcatggcttcctttcttctctttcactgact |
14167016 |
T |
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| Q |
366 |
catgaagaatgtcagcttcagtttttgccaatttcggatttatctcat |
413 |
Q |
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| T |
14167017 |
catgaagaattccagcttcagtttgcgccaattttggattgatctcat |
14167064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 396
Target Start/End: Original strand, 14152395 - 14152545
Alignment:
| Q |
246 |
ttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcgtgatttcc |
345 |
Q |
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| T |
14152395 |
ttatagaaaagccatgatcatctcggtaacggttgaaagttgccttaagttgagtcttgctccttgtaataaggatcctgataacttcttcaatgtttcc |
14152494 |
T |
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| Q |
346 |
ttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaa |
396 |
Q |
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| T |
14152495 |
tttcttgtttttgacagcctcatgaagaatatcagcttcatgttttgccaa |
14152545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 5180996 - 5180822
Alignment:
| Q |
239 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcgt |
338 |
Q |
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|||||| | ||||| |||||||| ||||| || || |||||||||||||||| ||| ||||||||||||||||| ||||| || |||||| ||||||| | |
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| T |
5180996 |
accttactaatggagatgccatgttcatccctataacggttgaaagttgccacaagttgagtcttgctccttgtggtaagaatcctaatgacttcttcat |
5180897 |
T |
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| Q |
339 |
gatttccttttttctctttgattgattcatgaagaatgtcagcttcagtttttgccaatttcggatttatctcat |
413 |
Q |
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| T |
5180896 |
tgttgcctttcttttccttgacactttcatgaataatattagcctcagtttgtgccaattttgcattgatctcat |
5180822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 5181393 - 5181316
Alignment:
| Q |
55 |
taaccttttcatagtacttcttatggtcattgatgcatcgaatcgtagtgtgcaatgccttgtgaaaatcatcagatg |
132 |
Q |
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| T |
5181393 |
taaccttctcatagtactttttgtggtcattgatgcaacgaatagctgtgtgcaatgtcttctggaagtcatcagatg |
5181316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 342
Target Start/End: Complemental strand, 5185535 - 5185432
Alignment:
| Q |
239 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcgt |
338 |
Q |
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| T |
5185535 |
accttagtgatagcaatgccatggtcatgcctatagcaattgaaagttgctacaagttgtgttttgctccttgttgtaagaattctaattacttcttcat |
5185436 |
T |
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| Q |
339 |
gatt |
342 |
Q |
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|||| |
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| T |
5185435 |
gatt |
5185432 |
T |
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