View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11974_low_8 (Length: 341)

Name: NF11974_low_8
Description: NF11974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11974_low_8
NF11974_low_8
[»] chr1 (7 HSPs)
chr1 (14-272)||(787586-787844)
chr1 (151-272)||(45576168-45576292)
chr1 (116-221)||(27585829-27585932)
chr1 (151-271)||(786995-787118)
chr1 (137-221)||(36475825-36475909)
chr1 (145-218)||(47445185-47445257)
chr1 (154-221)||(47445643-47445710)
[»] chr3 (8 HSPs)
chr3 (134-272)||(42078387-42078525)
chr3 (116-221)||(35942622-35942726)
chr3 (16-116)||(42078243-42078343)
chr3 (204-272)||(31799707-31799775)
chr3 (197-255)||(50382089-50382147)
chr3 (210-272)||(30701522-30701584)
chr3 (145-218)||(50837662-50837733)
chr3 (203-270)||(50382587-50382651)
[»] chr7 (11 HSPs)
chr7 (116-272)||(23256412-23256570)
chr7 (197-272)||(32390158-32390233)
chr7 (135-272)||(32390656-32390794)
chr7 (116-189)||(3986751-3986824)
chr7 (58-112)||(21082443-21082497)
chr7 (229-271)||(23429551-23429593)
chr7 (145-218)||(36067965-36068037)
chr7 (207-272)||(41590328-41590392)
chr7 (204-271)||(25932951-25933018)
chr7 (31-59)||(21082514-21082542)
chr7 (230-270)||(44113718-44113758)
[»] chr5 (7 HSPs)
chr5 (116-221)||(29500546-29500651)
chr5 (127-254)||(14278537-14278663)
chr5 (184-272)||(971057-971145)
chr5 (116-221)||(7491448-7491552)
chr5 (145-218)||(36429929-36430001)
chr5 (210-272)||(27755568-27755630)
chr5 (230-270)||(41906185-41906225)
[»] scaffold0169 (1 HSPs)
scaffold0169 (116-266)||(26922-27072)
[»] chr6 (3 HSPs)
chr6 (119-272)||(18748936-18749096)
chr6 (145-218)||(17732219-17732291)
chr6 (145-218)||(30710143-30710214)
[»] chr4 (6 HSPs)
chr4 (116-221)||(21226367-21226470)
chr4 (197-272)||(11147974-11148049)
chr4 (151-272)||(31632618-31632740)
chr4 (229-269)||(6352486-6352526)
chr4 (144-218)||(27455569-27455640)
chr4 (145-218)||(49681461-49681533)
[»] chr2 (7 HSPs)
chr2 (116-272)||(33003027-33003188)
chr2 (116-271)||(45114616-45114772)
chr2 (145-218)||(10256347-10256419)
chr2 (210-272)||(44463877-44463939)
chr2 (231-272)||(37394205-37394246)
chr2 (116-160)||(15765495-15765539)
chr2 (173-221)||(33003616-33003663)
[»] scaffold0102 (1 HSPs)
scaffold0102 (145-218)||(33002-33075)
[»] chr8 (4 HSPs)
chr8 (202-263)||(38675473-38675534)
chr8 (210-272)||(15279322-15279384)
chr8 (210-272)||(15459691-15459753)
chr8 (145-209)||(14791317-14791380)
[»] scaffold0141 (2 HSPs)
scaffold0141 (232-272)||(31315-31355)
scaffold0141 (232-272)||(35078-35118)
[»] scaffold0049 (2 HSPs)
scaffold0049 (232-272)||(79694-79734)
scaffold0049 (232-272)||(83457-83497)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 787586 - 787844
Alignment:
Q  14 aggggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  787586 aggggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtgactttatagaatcatca 787685  T
Q  114 attgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatga 213  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  787686 attgttattgttgttgaaggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgttgtttcttaaatatttttttggattttttatga 787785  T
Q  214 atattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  787786 atattgataaaagtaatgttgaagatggtgaagaagtggaaggaagaagatgaagaaag 787844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 45576292 - 45576168
Alignment:
Q  151 tgagatgatggtggtggtgttgatgattgctgtttctta-aatatttttctggatttttt--atgaatattgataaaagtaatgttgaagatggtgagga 247  Q
    ||||||||||||||||||||||||| ||| |||||| || || |   || ||||||||||  |||||||||||| || || |||||||||| | ||| ||    
T  45576292 tgagatgatggtggtggtgttgatggttgttgtttcctataaaacaattatggattttttttatgaatattgatgaaggtgatgttgaagaagatgaaga 45576193  T
Q  248 agtggaaggaagaagatgaagaaag 272  Q
     |||||||||||||||| |||||||    
T  45576192 tgtggaaggaagaagataaagaaag 45576168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 27585829 - 27585932
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaa-atatttttctggattttttatgaa 214  Q
    |||||||||| |||||||||   ||||| |||||||||||||||| || || |||| ||| ||| ||||||||||  | ||||||| |||||||||||||    
T  27585829 tgttattgttgttgatggtg---gaggtgtagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttttttcttgattttttatgaa 27585925  T
Q  215 tattgat 221  Q
    |||||||    
T  27585926 tattgat 27585932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 787118 - 786995
Alignment:
Q  151 tgagatgatggtggtggtgttgatgattgctgtttcttaaa-tatttttctgga-ttttttatgaatattgataaaagtaatgttgaagatggtgaggaa 248  Q
    ||||||||||||||||||||||||||||| |||||| ||||  |   ||||| | ||||||||||| |||||| || || |||||||||| | ||| ||     
T  787118 tgagatgatggtggtggtgttgatgattgttgtttcctaaagaaaaattctgaatttttttatgaacattgatgaaggtgatgttgaagaagatgaagat 787019  T
Q  249 gtggaaggaag-aagatgaagaaa 271  Q
    ||||||||||| ||||||||||||    
T  787018 gtggaaggaagaaagatgaagaaa 786995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 36475825 - 36475909
Alignment:
Q  137 tggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggat-tttttatgaatattgat 221  Q
    ||||||| |||||||||||||||| || || |||| ||| ||| |||||||| ||| ||||||||||| |||||||||||||||||    
T  36475825 tggaggtgtagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggatgtttttatgaatattgat 36475909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 47445257 - 47445185
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| |||||||| ||| |||||||||||||||||| ||||||    
T  47445257 tagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggattttttataaatatt 47445185  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 47445643 - 47445710
Alignment:
Q  154 gatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggatttt-ttatgaatattgat 221  Q
    ||||||| || || |||| ||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  47445643 gatgatgatgttgttgttaatggttgttgtttcttaaat-tttttctggatttttttatgaatattgat 47445710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 42078387 - 42078525
Alignment:
Q  134 tgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatattgataaaagtaatgtt 233  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42078387 tgttggaggtttagtaatgatatggtggtggtggtgttgatgattgttgtgtcttaaatatttttctggattttttatgaatattgataaaagtgatgtt 42078486  T
Q  234 gaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||| ||| |||||||||||||||||||||| ||||    
T  42078487 gaagatgatgaagaagtggaaggaagaagatgaaaaaag 42078525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 35942622 - 35942726
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaat 215  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||| || |||| ||| ||| |||||||| ||| ||||||||||||||||||||||    
T  35942622 tgttattgttgttgatggtggtggaggtgtagtaatgagatgatggtgatgttgttaatggttgttgtttctt-aatttttttctggattttttatgaat 35942720  T
Q  216 attgat 221  Q
    ||||||    
T  35942721 attgat 35942726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 42078243 - 42078343
Alignment:
Q  16 gggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatcaat 115  Q
    |||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |  ||||||||||    
T  42078243 gggagagcggttctcttaaatatatggcgacaaattgctttggacatcaattgttttttcacttttcctattgcatctatcactttctttaatcatcaat 42078342  T
Q  116 t 116  Q
    |    
T  42078343 t 42078343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 31799775 - 31799707
Alignment:
Q  204 ttttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||||||||||||||| || || |||||||||||| ||| ||||||||  |||||||||||||||||    
T  31799775 ttttttatgaatattgatgaaggtgatgttgaagatgatgaagaagtggatagaagaagatgaagaaag 31799707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 50382147 - 50382089
Alignment:
Q  197 ttctggattttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaag 255  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||| ||| ||||||||||    
T  50382147 ttctgcattttttatgaacattgatgaaagtgatgttgaagatgatgaagaagtggaag 50382089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 30701522 - 30701584
Alignment:
Q  210 atgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||| ||||| || || | |||||||||| ||| |||| ||||||||||||||||||||||    
T  30701522 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaag 30701584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 50837733 - 50837662
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| ||||||||||   |||||||||||||||||| ||||||    
T  50837733 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa--ttttttctggattttttataaatatt 50837662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 50382587 - 50382651
Alignment:
Q  203 attttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaa 270  Q
    ||||||||| || ||| || ||||| |||||||||||| |||   |||||||||||||||||||||||    
T  50382587 attttttataaacattcatgaaagtgatgttgaagatgatga---agtggaaggaagaagatgaagaa 50382651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 272
Target Start/End: Complemental strand, 23256570 - 23256412
Alignment:
Q  116 tgttattgtttttgatggtg-ttggaggtttagtaatgagatgatggtggtggtgttgat-gattgctgtttcttaaatatttttctggattttttatga 213  Q
    |||||||||| ||||||||| ||||||||   ||||||||||||||||  || ||||||| | ||| |||||||||||     ||||| |||||||||||    
T  23256570 tgttattgttgttgatggtggttggaggtgacgtaatgagatgatggtaatgttgttgataggttgttgtttcttaaaacaaattctgcattttttatga 23256471  T
Q  214 atattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||||| ||||| || ||||||||| ||| |||||||||||||||||||||||||||    
T  23256470 atattgatgaaagtgatattgaagatgatgaagaagtggaaggaagaagatgaagaaag 23256412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 32390233 - 32390158
Alignment:
Q  197 ttctggattttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||| |||||||||||| |||||| ||||| ||||| |||||| ||| |||||||||||||||||||||||||||    
T  32390233 ttctgcattttttatgaacattgatgaaagtgatgttaaagatgatgaagaagtggaaggaagaagatgaagaaag 32390158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 272
Target Start/End: Original strand, 32390656 - 32390794
Alignment:
Q  135 gttggaggtttagtaatgagatgatggtggtggtgttgat-gattgctgtttcttaaatatttttctggattttttatgaatattgataaaagtaatgtt 233  Q
    |||||||||  ||||||||||||||| || || ||||||| | ||| |||||||||||     ||||| ||||||||| || || ||| ||||| || ||    
T  32390656 gttggaggtgaagtaatgagatgatgatgatgttgttgataggttgttgtttcttaaaacaaattctgcattttttataaacatagatgaaagtgatttt 32390755  T
Q  234 gaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||| ||| |||||||||| ||||||||||||||||    
T  32390756 gaagatgatgaagaagtggaagaaagaagatgaagaaag 32390794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 3986824 - 3986751
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttctta 189  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| || || |||| ||||||| |||||||||    
T  3986824 tgttattgttgttgatggtggtggaggtgtagtaatgagatgatgatgatgatgttaatgattgttgtttctta 3986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 21082497 - 21082443
Alignment:
Q  58 gacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatc 112  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||||||||||    
T  21082497 gacatcaattgttttttcacttttcctgttgcatctatcaccttctagaatcatc 21082443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 23429551 - 23429593
Alignment:
Q  229 atgttgaagatggtgaggaagtggaaggaagaagatgaagaaa 271  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  23429551 atgttgaagatgatgaagaagtggaaggaagaagatgaagaaa 23429593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 36067965 - 36068037
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| |||||||| ||| |||||||||||||||||| ||||||    
T  36067965 tagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggattttttataaatatt 36068037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 41590328 - 41590392
Alignment:
Q  207 tttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||||||||| || ||  ||||||||||| ||| ||||||||||||| |||||||||||||    
T  41590328 tttatgaatattgatgaaggtg-tgttgaagatgatgaagaagtggaaggaaaaagatgaagaaag 41590392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 25933018 - 25932951
Alignment:
Q  204 ttttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaa 271  Q
    |||||||| ||||||||| ||||| |||||||||||| ||| |||  | |||| ||||||||||||||    
T  25933018 ttttttataaatattgatgaaagtgatgttgaagatgatgaagaatagaaaggtagaagatgaagaaa 25932951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 21082542 - 21082514
Alignment:
Q  31 ttaaataaatagagacaaattgctttgga 59  Q
    |||||||||||||||||||||||||||||    
T  21082542 ttaaataaatagagacaaattgctttgga 21082514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 44113758 - 44113718
Alignment:
Q  230 tgttgaagatggtgaggaagtggaaggaagaagatgaagaa 270  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  44113758 tgttgaagatgatgaagaagtgaaaggaagaagatgaagaa 44113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 29500546 - 29500651
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaat 215  Q
    |||||||||| ||||||||| |||| || |||||||||||||||| || || |||| ||| ||| | |||||||||||||||||| ||||||||||||||    
T  29500546 tgttattgttgttgatggtggtggatgtgtagtaatgagatgatgatgatgttgttaatggttgttatttcttaaatatttttctagattttttatgaat 29500645  T
Q  216 attgat 221  Q
    ||||||    
T  29500646 attgat 29500651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 14278537 - 14278663
Alignment:
Q  127 ttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatattgataaaag 226  Q
    |||||| || |||| || |||||||||||||||| || || |||||||||||| |||||||||| ||||||| |||||||||||| ||||||||| || |    
T  14278537 ttgatgatggtggaagtgtagtaatgagatgatgatgatgttgttgatgattgttgtttcttaattattttt-tggattttttattaatattgatgaagg 14278635  T
Q  227 taatgttgaagatggtgaggaagtggaa 254  Q
    |  ||||| ||||| ||| |||||||||    
T  14278636 tggtgttggagatgatgaagaagtggaa 14278663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 971057 - 971145
Alignment:
Q  184 ttcttaaatatttttctggattttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||| | ||||||||||| |||||||||||||||| ||  || ||||||||||| ||| |||||| ||||||||||||||||||||    
T  971057 ttcttaattttttttctggatattttatgaatattgatgaagctagtgttgaagatgatgaagaagtgaaaggaagaagatgaagaaag 971145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 7491552 - 7491448
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaat 215  Q
    |||||||| | ||||||||| ||||||| ||||||| |||||||| || || |||| ||| ||  |||||||||| | ||||||||||||||||  ||||    
T  7491552 tgttattgctgttgatggtggtggaggtgtagtaataagatgatgatgatgttgttaatggttattgtttcttaatt-tttttctggatttttttggaat 7491454  T
Q  216 attgat 221  Q
    ||||||    
T  7491453 attgat 7491448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 36429929 - 36430001
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| |||||||||||| ||| |||||||||||||||||| ||||||    
T  36429929 tagtaatgagatgatgatgatgttgttaatggttgctgtttctt-aatttttttctggattttttataaatatt 36430001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 27755630 - 27755568
Alignment:
Q  210 atgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||| ||||| || || | |||||||||| ||| |||| ||||||||||||||||||||||    
T  27755630 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaag 27755568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 41906185 - 41906225
Alignment:
Q  230 tgttgaagatggtgaggaagtggaaggaagaagatgaagaa 270  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  41906185 tgttgaagatgatgaagaagtgaaaggaagaagatgaagaa 41906225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 27072 - 26922
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgat-gattgctgtttcttaaatatttttctggattttttatgaa 214  Q
    |||||||||| ||||||||| |||||||  ||||||||||||||| || || ||||||| | ||| |||||||||||     ||||| ||||||||| ||    
T  27072 tgttattgttgttgatggtggtggaggtgaagtaatgagatgatgatgatgttgttgataggttgttgtttcttaaaataaattctgcattttttat-aa 26974  T
Q  215 tattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatga 266  Q
     |||||| ||||| |||||||||||| ||| ||||| |||||||||||||||    
T  26973 cattgatgaaagtgatgttgaagatgatgaagaagtagaaggaagaagatga 26922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 18749096 - 18748936
Alignment:
Q  119 tattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttc-------tggattttttat 211  Q
    |||||||||| |||||| | ||||| || ||||||||||||| || || |||||||||||| ||||||||||| ||            ||||||||||||    
T  18749096 tattgttttttatggtggtagaggtgtaataatgagatgatgatgttgttgttgatgattgttgtttcttaaaaataaaataaaaaattggattttttat 18748997  T
Q  212 gaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||||||| ||||| || || |||||| ||| |||||||||||||||||||||||||||    
T  18748996 gaatattgatgaaagtgatattaaagatgatgaagaagtggaaggaagaagatgaagaaag 18748936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 17732291 - 17732219
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| |||||||| ||| |||||||||||||||||| ||||||    
T  17732291 tagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggattttttataaatatt 17732219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 30710143 - 30710214
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| ||||||||||   |||||||||||||||||| ||||||    
T  30710143 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa--ttttttctggattttttataaatatt 30710214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 21226367 - 21226470
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaa-atatttttctggattttttatgaa 214  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||   || || |||| ||| ||| ||||||||||  | |||||||||||||||||||||    
T  21226367 tgttattgttgttgatggtggtggaggtgtagtaatgagatga---tgatgttgttaatggttgttgtttcttaatttttttttctggattttttatgaa 21226463  T
Q  215 tattgat 221  Q
    |||||||    
T  21226464 tattgat 21226470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 11148049 - 11147974
Alignment:
Q  197 ttctggattttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||| |||||||||| | |||||| ||||| |||||||| ||| ||| ||||||||||||||||| |||||||||    
T  11148049 ttctgcattttttatggacattgatgaaagtgatgttgaatatgatgaagaagtggaaggaagaaggtgaagaaag 11147974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 31632740 - 31632618
Alignment:
Q  151 tgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggatttttt-atgaatattgataaaagtaatgttgaagatggtgaggaag 249  Q
    |||||||||||||| |||||||||| ||| |||||| ||||      |||||||||||| ||||||||||||||| || |||||||||| | ||| ||      
T  31632740 tgagatgatggtggcggtgttgatggttgttgtttcctaaaataaaatctggatttttttatgaatattgataaaggtgatgttgaagaagatgaagatc 31632641  T
Q  250 tggaaggaagaagatgaagaaag 272  Q
    | |||||||||| ||||||||||    
T  31632640 tagaaggaagaatatgaagaaag 31632618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 6352486 - 6352526
Alignment:
Q  229 atgttgaagatggtgaggaagtggaaggaagaagatgaaga 269  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  6352486 atgttgaagatggtgaagaagaggaaggaagaagatgaaga 6352526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 27455569 - 27455640
Alignment:
Q  144 ttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    ||||||||||||||||| || || |||| ||| ||| |||||||||   ||||||||||||||||||| ||||||    
T  27455569 ttagtaatgagatgatgatgatgttgttaatggttgttgtttctta---atttttctggattttttataaatatt 27455640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 49681533 - 49681461
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||  || || |||| ||| ||| |||||||||| | |||||||||||||||||| ||||||    
T  49681533 tagtaatgagatgataatgatgttgttaatggttgttgtttcttaatt-tttttctggattttttataaatatt 49681461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 272
Target Start/End: Complemental strand, 33003188 - 33003027
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaat--atttttctgga---tttttta 210  Q
    |||||||||| ||||||||| ||||| | |||||||||||||||| || || |||| ||| ||| |||||||||| |   ||||| ||||   |||||||    
T  33003188 tgttattgttgttgatggtggtggagatgtagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttattttttttggattttttttta 33003089  T
Q  211 tgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||||| || ||  ||| ||  ||| |||  ||||||||||||||||||||||||||    
T  33003088 tgaatattgatgaaggtggtgtagattatgatgaaaaagtggaaggaagaagatgaagaaag 33003027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 45114616 - 45114772
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgat-gattgctgtttcttaaatatttttctggattttttatgaa 214  Q
    |||||||||| ||||||||  |||||||  ||| ||||||||||| || || ||||||| | ||| |||||||||||     ||||| ||||||||| ||    
T  45114616 tgttattgttgttgatggttgtggaggtgaagtgatgagatgatgatgatgttgttgataggttgttgtttcttaaaacaaattctgcattttttataaa 45114715  T
Q  215 tattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaa 271  Q
     |||||| ||||| |||||||||||| ||| ||| | ||||||||| ||||||||||    
T  45114716 cattgatgaaagtgatgttgaagatgatgaagaaatagaaggaagatgatgaagaaa 45114772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 10256347 - 10256419
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| |||||||| ||| |||||||||||||||||| ||||||    
T  10256347 tagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggattttttataaatatt 10256419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 44463939 - 44463877
Alignment:
Q  210 atgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||| ||||| || || | |||||||||| ||| |||| ||||||||||||||||||||||    
T  44463939 atgaatgttgatgaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaag 44463877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 37394246 - 37394205
Alignment:
Q  231 gttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  37394246 gttgaagatgatgaagaagaggaaggaagaagatgaagaaag 37394205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 15765495 - 15765539
Alignment:
Q  116 tgttattgtttttgatggtgttggaggtttagtaatgagatgatg 160  Q
    |||||||||| ||||||||  ||||||| ||||||||||||||||    
T  15765495 tgttattgttgttgatggtagtggaggtatagtaatgagatgatg 15765539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 33003616 - 33003663
Alignment:
Q  173 atgattgctgtttcttaaatatttttctggattttttatgaatattgat 221  Q
    ||||||| |||||||||| ||||||| | ||||||||||||||||||||    
T  33003616 atgattgttgtttcttaa-tatttttttagattttttatgaatattgat 33003663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 33002 - 33075
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggattttttatgaatatt 218  Q
    |||||||||||||||| || || |||| ||| ||| |||||||||| | |||||||||||||||||| ||||||    
T  33002 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaattttttttctggattttttataaatatt 33075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 38675534 - 38675473
Alignment:
Q  202 gattttttatgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaaga 263  Q
    |||||||||||||||||||| || || |||| ||||||| ||| ||||||||||||||||||    
T  38675534 gattttttatgaatattgatgaaggtgatgtcgaagatgatgaagaagtggaaggaagaaga 38675473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 15279322 - 15279384
Alignment:
Q  210 atgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||| |||||||| || | |||||||||| ||| |||| ||||||||||||||||||||||    
T  15279322 atgaatgttgataaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaag 15279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 15459691 - 15459753
Alignment:
Q  210 atgaatattgataaaagtaatgttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    |||||| |||||||| || | |||||||||| ||| |||| ||||||||||||||||||||||    
T  15459691 atgaatgttgataaaggtgaggttgaagatgatgaagaagaggaaggaagaagatgaagaaag 15459753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 14791317 - 14791380
Alignment:
Q  145 tagtaatgagatgatggtggtggtgttgatgattgctgtttcttaaatatttttctggatttttt 209  Q
    |||||||||||||||| || || |||| ||| ||| |||||||| ||| ||||||||||||||||    
T  14791317 tagtaatgagatgatgatgatgttgttaatggttgttgtttctt-aatttttttctggatttttt 14791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 31355 - 31315
Alignment:
Q  232 ttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  31355 ttgaagatgatgaagaagtgggaggaagaagatgaagaaag 31315  T

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Target: scaffold0141; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 35078 - 35118
Alignment:
Q  232 ttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  35078 ttgaagatgatgaagaagtgggaggaagaagatgaagaaag 35118  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 79734 - 79694
Alignment:
Q  232 ttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  79734 ttgaagatgatgaagaagtgggaggaagaagatgaagaaag 79694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 83457 - 83497
Alignment:
Q  232 ttgaagatggtgaggaagtggaaggaagaagatgaagaaag 272  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  83457 ttgaagatgatgaagaagtgggaggaagaagatgaagaaag 83497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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