View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_high_1 (Length: 786)
Name: NF11975_high_1
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 774
Target Start/End: Complemental strand, 10333693 - 10332970
Alignment:
| Q |
20 |
taaatgaccaagaaataagggctccttgaaatatgaacacaaaaactattagcatatgagtaacctatcatgttgagttgctcaaatctttttccagtag |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10333693 |
taaatgaccaagaaataagggctccttgtaatatgaacacaaaaactattagcatatgagtaacctatcatgttgagttgctcaaatctttctccagtag |
10333594 |
T |
|
| Q |
120 |
aaaatacgatgccatgatgtagtgtcccatttatgtacctcggtattcttttaacgactaagaaatgagttttaagatgattactcatgaacttggtcac |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10333593 |
aaaataggatgccatgatgtagtgtcccatttatgtacctcggtattcttttaacgact-------------taagatgattactcatgaacttggtcac |
10333507 |
T |
|
| Q |
220 |
catttcaactgaatagcgaatattcggtttgctttgacatagatacgtaccttagtgatccaataagcttcctgaatagttttggatcaacactttctta |
319 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
10333506 |
catttcaactgaatagcgaatattcggtctgctttgacatagatac----cttagcgattcaataagcttcatgaatagtgttggatcaacactttcttc |
10333411 |
T |
|
| Q |
320 |
tttttcgtttacttcatttctgatattaatatatgttggagtggtagctgaattgcaatccaacatattgatccagatattgaacct-ttcagaatctca |
418 |
Q |
| |
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|||||| || ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
10333410 |
tttttctttcacttcatttatgatattaatat--gtt--agtggtagctgaattgcaatccaacatattga------------acctcttcaggatctca |
10333327 |
T |
|
| Q |
419 |
gtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| || ||||||||| ||||||||||| |
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| T |
10333326 |
gtagcatacttggtctgatgaagtatcaagccttttgaggttctgagaatctctattcctaagaaatatgcaagctttcctagaccaatcatttcaaatt |
10333227 |
T |
|
| Q |
518 |
ctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctc |
617 |
Q |
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| T |
10333226 |
ctgacttcatgactgatttaaactcttcaatatcttgaatttatcttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctc |
10333127 |
T |
|
| Q |
618 |
ttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtcaannnnnnnattctaggccctaggttct |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10333126 |
ttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtcaatttttttattctaggccctaggttct |
10333027 |
T |
|
| Q |
718 |
catttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
774 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333026 |
catttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
10332970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 592
Target Start/End: Complemental strand, 33685066 - 33684886
Alignment:
| Q |
413 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
511 |
Q |
| |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33685066 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33684967 |
T |
|
| Q |
512 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
592 |
Q |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33684966 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33684886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 592
Target Start/End: Complemental strand, 33702120 - 33701940
Alignment:
| Q |
413 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
511 |
Q |
| |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33702120 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33702021 |
T |
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| Q |
512 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
592 |
Q |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33702020 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33701940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 14640553 - 14640496
Alignment:
| Q |
177 |
ctaagaaatgagttttaagatgattactcatgaacttggtcaccatttcaactgaata |
234 |
Q |
| |
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|||||||||||||||| ||| | ||||||||||||||| | || ||| |||||||||| |
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| T |
14640553 |
ctaagaaatgagttttgagagggttactcatgaacttgctaacaattccaactgaata |
14640496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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