View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_high_12 (Length: 525)
Name: NF11975_high_12
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 28400885 - 28400361
Alignment:
| Q |
1 |
ctcctcaaatcctgcttgcattgtcccaattttccaaatctctttttcttttcactatcaaatttctctttaacccaaattcaacaaaaacacagaaaaa |
100 |
Q |
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| T |
28400885 |
ctcctcaaatcctgcttgcattgtcccaattttccaaatctctttttcttttcactatcaaatttctctttaacccaaattcaacaaaaacacagaaaaa |
28400786 |
T |
|
| Q |
101 |
acaacgnnnnnnnnnc-----ttccattatcttcttccttgaatctcaagctcaaaactcattatttgttgaaaatctcaagattttgccaccaaccctt |
195 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28400785 |
acaacgttttttttttcttctttcaattatcttcttccttgaatctcaagctcaaaactcattatttgttgaaaatctcaagattttgccaccaacccat |
28400686 |
T |
|
| Q |
196 |
ttcagaaaatcaactagtttcttcaaagatctggtttttattcttcccgaagtgaattttctgcaaatttttctcttcccattgttggtgtttgcagaga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28400685 |
ttcagaaaatcaactagtttcttcaaagatctggtttttattcttcccgaagtgaattttctgcaaatttttctcttcccattgttggtgtttgcagaga |
28400586 |
T |
|
| Q |
296 |
ggtacacagcacaatgttgaacaattcatggctgtttttgctgtgtaagctataaagtttcaatcttttctctcactgttgcattctagcttctgtagtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28400585 |
ggtacacagcacaatgttgaacaattcatggctgtttttgctgtgtaagctataaagtttcaatcttttctctcactgttgcattctagcttctgtagtt |
28400486 |
T |
|
| Q |
396 |
gtgtctcttagttataaattctcattgggttgtatttaattttggtttttaacaattttaacatatgagatcttgatgagggttgtaacaattttccttg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28400485 |
gtgtctcttagttataaattctcattgggttgtatttaattttggtttttaacaattttaacatatgagatcttgatgagggttgtaacaattttccttg |
28400386 |
T |
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| Q |
496 |
caattcttacattgcctttgcttct |
520 |
Q |
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|||||||||||||||| ||| |||| |
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| T |
28400385 |
caattcttacattgccattgtttct |
28400361 |
T |
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