View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_high_18 (Length: 391)
Name: NF11975_high_18
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 10506941 - 10506595
Alignment:
| Q |
18 |
attacaaattcaaccatgcatgtatctttgctagaaactttaatttatgaggtctgaaagtgaagtgttggttaaaactggccatgtggtctcgtgaaat |
117 |
Q |
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| T |
10506941 |
attacaaatacaaccatgcatgtatctttgctagcaacttta-----tgaggtctgaaagtgaaatgttggttaaaactggccatgtggtctcatgaaat |
10506847 |
T |
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| Q |
118 |
tgtgtgaatgtggatattcatgtccatgttccctcctcaaagtaggaccaagatatgtaaaatcaggtttatgtgttggaaatggtgggtggattgagtg |
217 |
Q |
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| T |
10506846 |
tgtgtgaatgtggatattcatgtgcatgttccctcctcaaagtaggaccaagatatgtaaaatcaggtttatgtgttggaaatggtgggtggatcgaggg |
10506747 |
T |
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| Q |
218 |
tggtgtgaaatttgtttgcatggaatgaaacataggaccaccatatgtagagactnnnnnnnnnnnntaccagcaagcattaaaaggattcctttggggc |
317 |
Q |
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| T |
10506746 |
ttgtgtgaaatttgtttgcatggaatgaaacataggaccaccatatgttgagactggggctggggggtaccagcaagcattaaaaggattcctttggggc |
10506647 |
T |
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| Q |
318 |
tggggtgcagcagcaaatagggtggtgctgttagaaatattggcatactgat |
369 |
Q |
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| T |
10506646 |
tggggtgcagcagcaaatagggtggtgctgttagaaatattgtcatactgat |
10506595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 24405743 - 24405687
Alignment:
| Q |
156 |
aaagtaggaccaagatatgtaaaatcaggtttatgtgttggaaatggtgggtggatt |
212 |
Q |
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| T |
24405743 |
aaagtaggaccaagatatgtaaaatcgggtttttgggtttgaaatggtggatggatt |
24405687 |
T |
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