View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_high_20 (Length: 351)
Name: NF11975_high_20
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 10333693 - 10333394
Alignment:
| Q |
20 |
taaatgaccaagaaataagggctccttgaaatatgaacacaaaaactattagcatatgagtaacctatcatgttgagttgctcaaatctttttccagtag |
119 |
Q |
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| T |
10333693 |
taaatgaccaagaaataagggctccttgtaatatgaacacaaaaactattagcatatgagtaacctatcatgttgagttgctcaaatctttctccagtag |
10333594 |
T |
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| Q |
120 |
aaaatacgatgccatgatgtagtgtcccatttatgtacctcggtattcttttaacgactaagaaatgagttttaagatgattactcatgaacttggtcac |
219 |
Q |
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| T |
10333593 |
aaaataggatgccatgatgtagtgtcccatttatgtacctcggtattcttttaacgac-------------ttaagatgattactcatgaacttggtcac |
10333507 |
T |
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| Q |
220 |
catttcaactgaatagcgaatattcggtttgctttgacatagatacgtaccttagtgatccaataagcttcctgaatagttttggatcaacactttctta |
319 |
Q |
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| T |
10333506 |
catttcaactgaatagcgaatattcggtctgctttgacataga----taccttagcgattcaataagcttcatgaatagtgttggatcaacactttcttc |
10333411 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 14640553 - 14640496
Alignment:
| Q |
177 |
ctaagaaatgagttttaagatgattactcatgaacttggtcaccatttcaactgaata |
234 |
Q |
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| T |
14640553 |
ctaagaaatgagttttgagagggttactcatgaacttgctaacaattccaactgaata |
14640496 |
T |
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