View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_high_28 (Length: 254)
Name: NF11975_high_28
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 10506405 - 10506271
Alignment:
| Q |
105 |
ttgtgttaagatttgatgtttcggcttcagcacatactgattgtgaaatatttggagcgtcttctgattttactatgtcactatagtagccaaataatcg |
204 |
Q |
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| T |
10506405 |
ttgtgttaagatttgatgtttcggcttcagcacatactgattgtgaaatatttggagtgtcttccgattttactatgtcactatagtagccaaataatcg |
10506306 |
T |
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| Q |
205 |
caaattttgcttagtaatatcaagaaccggttcat |
239 |
Q |
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| T |
10506305 |
caaattttgcttagtaatatcaagaactggttcat |
10506271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10506557 - 10506466
Alignment:
| Q |
1 |
ttgaaccatttcttgttcctgcaaagtttcaccacatattgttgaagtttcgaattctggttccttttgaagaataacagaaggtaaagatt |
92 |
Q |
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| T |
10506557 |
ttgaaccatttcttgttcaagcaaagtttcactacatattgttgaagtttcaaattctggttccttttgaagaataacagaaggtaaagatt |
10506466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 24405048 - 24405008
Alignment:
| Q |
153 |
tatttggagcgtcttctgattttactatgtcactatagtag |
193 |
Q |
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| T |
24405048 |
tatttggagtgtcttctgatttgactaagtcactatagtag |
24405008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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