View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11975_high_29 (Length: 254)

Name: NF11975_high_29
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11975_high_29
NF11975_high_29
[»] chr3 (4 HSPs)
chr3 (1-239)||(925641-925879)
chr3 (1-239)||(44702973-44703211)
chr3 (5-95)||(13364198-13364288)
chr3 (69-138)||(46921626-46921695)
[»] chr5 (2 HSPs)
chr5 (5-239)||(43026466-43026700)
chr5 (5-109)||(30442893-30442997)
[»] chr4 (2 HSPs)
chr4 (1-239)||(5454129-5454367)
chr4 (5-95)||(30176365-30176455)
[»] scaffold0007 (1 HSPs)
scaffold0007 (5-139)||(79276-79410)
[»] chr6 (3 HSPs)
chr6 (20-110)||(26533381-26533471)
chr6 (7-129)||(9853274-9853395)
chr6 (5-138)||(32263117-32263251)
[»] chr8 (1 HSPs)
chr8 (5-138)||(35615209-35615341)
[»] chr7 (3 HSPs)
chr7 (5-98)||(21314400-21314493)
chr7 (5-109)||(14231898-14232002)
chr7 (5-78)||(40674471-40674544)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 925641 - 925879
Alignment:
Q  1 catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  925641 catcaacaaaagtcaggggcaatcactcaaacaggttggcatttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggtt 925740  T
Q  101 acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925741 acatcaaggaaagggctgaaaattttgctgttagatgaaaacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt 925840  T
Q  201 agttgatttcactttgtttatttatctgttctgtttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  925841 agttgatttcactttgtttatttatctgttctgtttcat 925879  T

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Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44703211 - 44702973
Alignment:
Q  1 catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44703211 catcaacaaaagtcaggggcagtcactcaaacaggttgacatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt 44703112  T
Q  101 acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt 200  Q
    |||||||||||| ||||||| ||||||||||| |||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||    
T  44703111 acatcaaggaaatggctgaatattttgctgttggatgaacacggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggtt 44703012  T
Q  201 agttgatttcactttgtttatttatctgttctgtttcat 239  Q
    |||| |||||||| ||||||||||| |||||| ||||||    
T  44703011 agttaatttcactctgtttatttatttgttctatttcat 44702973  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 13364288 - 13364198
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaa 95  Q
    ||||||||||| ||||||||||| ||||| |||| ||| || |||||| |  || | ||||| |||||||||||||| ||||| |||||||    
T  13364288 aacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtagcaatatcaa 13364198  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 46921695 - 46921626
Alignment:
Q  69 atggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 138  Q
    |||||||||| || ||||| |||||||||||| | ||||| || ||  ||||||||||||| ||||||||    
T  46921695 atggtcaactttatgtagcaatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga 46921626  T

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Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 43026700 - 43026466
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 104  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43026700 aacaaaagtcaggggcagtcactcaagcaggttggcatttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 43026601  T
Q  105 caaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagtt 204  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43026600 caaggaaagggctgaaaattttgctgttagatgaacacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagtt 43026501  T
Q  205 gatttcactttgtttatttatctgttctgtttcat 239  Q
     |||||||| |||||||||||||||| ||||||||    
T  43026500 aatttcactctgtttatttatctgttatgtttcat 43026466  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 30442997 - 30442893
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 104  Q
    |||||||||||||| || ||||| ||  | |||||||| || ||||||||||| || ||||| ||||| || || || || || |||||| | |||||||    
T  30442997 aacaaaagtcagggacaatcacttaagtaagttggcatctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacat 30442898  T
Q  105 caagg 109  Q
    |||||    
T  30442897 caagg 30442893  T

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Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5454129 - 5454367
Alignment:
Q  1 catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5454129 catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggtt 5454228  T
Q  101 acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt 200  Q
    |||||||||||||| || ||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  5454229 acatcaaggaaaggacttaaaattttgttgttggatgaacacggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgttt 5454328  T
Q  201 agttgatttcactttgtttatttatctgttctgtttcat 239  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  5454329 agttaatttcactctgtttatttatctgttctgtttcat 5454367  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 30176455 - 30176365
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaa 95  Q
    |||||||||||  | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || |||||||    
T  30176455 aacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgatatcaa 30176365  T

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Target: scaffold0007 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 79410 - 79276
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 104  Q
    ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| ||||  ||||||||||| || ||||| |||||| | ||||| |    
T  79410 aacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtagcaatatcaggagttactt 79311  T
Q  105 caaggaaagggctgaaaattttgctgttagatgat 139  Q
    ||||||| || |||||||||| |||  ||||||||    
T  79310 caaggaatggtctgaaaatttcgctaatagatgat 79276  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
Q  20 cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga 110  Q
    |||||||||||||| |||||  | ||||||| |||||| |||||||||||||||||||  || || || ||||||||||||| ||||||||    
T  26533381 cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga 26533471  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
Q  7 caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca 106  Q
    ||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| ||||  ||||| || ||||| ||||| || ||||| |||    
T  9853274 caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca 9853372  T
Q  107 aggaaagggctgaaaattttgct 129  Q
    ||| | || ||||||||||||||    
T  9853373 agggatggcctgaaaattttgct 9853395  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 32263117 - 32263251
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgtagccatatcaagggttaca 103  Q
    ||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || ||||| |||||||| |||||     
T  32263117 aacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgtagcaatatcaagagttact 32263216  T
Q  104 tcaaggaaagggctgaaaattttgctgttagatga 138  Q
    |||| ||  ||  |||||||||||||  |||||||    
T  32263217 tcaatgagtggtttgaaaattttgctaatagatga 32263251  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 35615209 - 35615341
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 104  Q
    ||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || |  ||||||||||| || ||||| |||| ||| ||||| |    
T  35615209 aacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtagcaatat-aagagttactt 35615307  T
Q  105 caaggaaagggctgaaaattttgctgttagatga 138  Q
    ||||||| || ||  ||||||||||  |||||||    
T  35615308 caaggaatggtctagaaattttgctaatagatga 35615341  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 21314493 - 21314400
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 98  Q
    |||||||||||   |||||||||  |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||    
T  21314493 aacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg 21314400  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 14231898 - 14232002
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat 104  Q
    |||||||||||||| || ||||| || || |||||||| || ||||||||||| || ||||| ||||| || || || || || |||||| | |||||||    
T  14231898 aacaaaagtcagggacaatcacttaagcaagttggcatctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacat 14231997  T
Q  105 caagg 109  Q
    |||||    
T  14231998 caagg 14232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 40674544 - 40674471
Alignment:
Q  5 aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 78  Q
    |||||||||||   |||||||||  |||| ||||| || ||||||||||||||| | ||||| |||||||||||    
T  40674544 aacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact 40674471  T

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